X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fgui%2FPopupMenu.java;h=82ce8359874e9964066a88f7d468c3544eaf4c2c;hb=9a05eeccaf18e0c82cd183f0b84a8be42bf181c7;hp=a4808cff4bb48e766954f5e9f48dd7fff8545231;hpb=c45ff77fed27bdee9025cca9b16a3c03d8e21674;p=jalview.git

diff --git a/src/jalview/gui/PopupMenu.java b/src/jalview/gui/PopupMenu.java
index a4808cf..82ce835 100644
--- a/src/jalview/gui/PopupMenu.java
+++ b/src/jalview/gui/PopupMenu.java
@@ -282,7 +282,7 @@ public class PopupMenu extends JPopupMenu
     		  {
     			  System.out.println("Call Varna "+seq.getSequenceAsString()+" "+seq.getName());
     			  //TODO: VARNA does'nt print gaps in the sequence
-    			  new AppVarna(seq.getSequenceAsString(),rnastrucF,seq.getName());
+    			  new AppVarna(seq.getSequenceAsString(),rnastrucF,seq.getName(),ap);
     		  }
 		  	});	  
 		  	viewStructureMenu.add(menuItem);