X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fgui%2FPopupMenu.java;h=abe9835d3911bc5b89bc82b33191f77108e220c1;hb=c6018dc0dc12720e13b75850a5303279ac7094b7;hp=fc3c3422b64824409ac184c63655c6505362fef6;hpb=b59e6ecc36fb98f4285213a685d0546e98ebd556;p=jalview.git

diff --git a/src/jalview/gui/PopupMenu.java b/src/jalview/gui/PopupMenu.java
index fc3c342..abe9835 100644
--- a/src/jalview/gui/PopupMenu.java
+++ b/src/jalview/gui/PopupMenu.java
@@ -840,6 +840,13 @@ public class PopupMenu extends JPopupMenu implements ColourChangeListener
       }
       start = beginRange[0];
       end = endRange[endRange.length - 1];
+      int[] localRange = mf.getMappedPositions(start, end);
+      if (localRange == null)
+      {
+        return;
+      }
+      start = localRange[0];
+      end = localRange[localRange.length - 1];
     }
     StringBuilder desc = new StringBuilder();
     desc.append(sf.getType()).append(" ").append(String.valueOf(start));