X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fgui%2FPromptUserConfig.java;h=95d9c69c710a2f1bafe2e608417304ca899890d4;hb=bb3f28791ddb1a4f55e78a3bcd2ff4a591ebe95d;hp=a9c16563df9533928f97840404a979805d65b2df;hpb=d423f22792e47dbc800ae220a58677f988971d06;p=jalview.git

diff --git a/src/jalview/gui/PromptUserConfig.java b/src/jalview/gui/PromptUserConfig.java
index a9c1656..95d9c69 100644
--- a/src/jalview/gui/PromptUserConfig.java
+++ b/src/jalview/gui/PromptUserConfig.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
@@ -206,6 +206,12 @@ public class PromptUserConfig implements Runnable
               (allowCancel) ? JOptionPane.YES_NO_CANCEL_OPTION
                       : JOptionPane.YES_NO_OPTION,
               JOptionPane.QUESTION_MESSAGE);
+      // now, ask the desktop to relayer any external windows that might have been obsured
+      if (Desktop.instance!=null)
+      {
+        Desktop.instance.relayerWindows();
+      }
+      // and finish parsing the result
       jalview.bin.Cache.log.debug("Got response : " + reply);
       if (reply == JOptionPane.YES_OPTION)
       {