X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fgui%2FSeqCanvas.java;h=076ce5b7c0e5b4f69a8d0a9fa6ad2d585259bcc3;hb=418006c3714eb8da78234660698231597eb90fb1;hp=2a370c4713a2f433c11dec2f911f0f59a712cdfa;hpb=985fd5ff517f3eb5221a7aefec88138341514779;p=jalview.git diff --git a/src/jalview/gui/SeqCanvas.java b/src/jalview/gui/SeqCanvas.java index 2a370c4..076ce5b 100755 --- a/src/jalview/gui/SeqCanvas.java +++ b/src/jalview/gui/SeqCanvas.java @@ -38,14 +38,14 @@ import java.awt.Color; import java.awt.FontMetrics; import java.awt.Graphics; import java.awt.Graphics2D; +import java.awt.Rectangle; import java.awt.RenderingHints; -import java.awt.Shape; import java.awt.image.BufferedImage; import java.beans.PropertyChangeEvent; import java.util.Iterator; import java.util.List; -import javax.swing.JComponent; +import javax.swing.JPanel; /** * The Swing component on which the alignment sequences, and annotations (if @@ -53,7 +53,8 @@ import javax.swing.JComponent; * Wrapped mode, but not the scale above in Unwrapped mode. * */ -public class SeqCanvas extends JComponent implements ViewportListenerI +@SuppressWarnings("serial") +public class SeqCanvas extends JPanel implements ViewportListenerI { /* * pixels gap between sequences and annotations when in wrapped mode @@ -74,7 +75,7 @@ public class SeqCanvas extends JComponent implements ViewportListenerI private final SequenceRenderer seqRdr; - private boolean fastPaint = false; + boolean fastPaint = false; private boolean fastpainting = false; @@ -93,7 +94,8 @@ public class SeqCanvas extends JComponent implements ViewportListenerI private int wrappedVisibleWidths; // number of wrapped widths displayed - private Graphics2D gg; + // Don't do this! Graphics handles are supposed to be transient + //private Graphics2D gg; /** * Creates a new SeqCanvas object. @@ -114,7 +116,7 @@ public class SeqCanvas extends JComponent implements ViewportListenerI public SequenceRenderer getSequenceRenderer() { - return seqRdr; + return seqRdr; } public FeatureRenderer getFeatureRenderer() @@ -200,7 +202,7 @@ public class SeqCanvas extends JComponent implements ViewportListenerI int yPos = ypos + charHeight; int startX = startx; int endX = endx; - + if (av.hasHiddenColumns()) { HiddenColumns hiddenColumns = av.getAlignment().getHiddenColumns(); @@ -236,6 +238,7 @@ public class SeqCanvas extends JComponent implements ViewportListenerI } } + /* * white fill the space for the scale */ @@ -260,6 +263,7 @@ public class SeqCanvas extends JComponent implements ViewportListenerI g.drawString(valueAsString, xOffset, y); } } + } /** @@ -273,6 +277,7 @@ public class SeqCanvas extends JComponent implements ViewportListenerI *
- * Currently fastPaint is not implemented for wrapped alignments. If a wrapped - * alignment had to be scrolled to show the highlighted region, then it should - * be fully redrawn, otherwise a fast paint can be performed. This argument - * could be removed if fast paint of scrolled wrapped alignment is coded in - * future (JAL-2609). + * Optionally, set the 'fastPaint' flag for a faster redraw if only the + * highlighted regions are modified. This speeds up highlighting across linked + * alignments. + *
+ * Currently fastPaint is not implemented for scrolled wrapped alignments. If + * a wrapped alignment had to be scrolled to show the highlighted region, then + * it should be fully redrawn, otherwise a fast paint can be performed. This + * argument could be removed if fast paint of scrolled wrapped alignment is + * coded in future (JAL-2609). * * @param results - * @param noFastPaint + * @param doFastPaint + * if true, sets a flag so the next repaint only redraws the modified + * image * @return */ public boolean highlightSearchResults(SearchResultsI results, - boolean noFastPaint) + boolean doFastPaint) { if (fastpainting) { @@ -1483,7 +1533,7 @@ public class SeqCanvas extends JComponent implements ViewportListenerI boolean wrapped = av.getWrapAlignment(); try { - fastPaint = !noFastPaint; + fastPaint = doFastPaint; fastpainting = fastPaint; /* @@ -1540,7 +1590,7 @@ public class SeqCanvas extends JComponent implements ViewportListenerI */ protected boolean drawMappedPositions(SearchResultsI results) { - if ((results == null) || (gg == null)) // JAL-2784 check gg is not null + if ((results == null) || (img == null)) // JAL-2784 check gg is not null { return false; } @@ -1612,9 +1662,11 @@ public class SeqCanvas extends JComponent implements ViewportListenerI } int transX = (firstCol - ranges.getStartRes()) * av.getCharWidth(); int transY = (firstSeq - ranges.getStartSeq()) * av.getCharHeight(); + Graphics gg = img.getGraphics(); gg.translate(transX, transY); drawPanel(gg, firstCol, lastCol, firstSeq, lastSeq, 0); gg.translate(-transX, -transY); + gg.dispose(); } return matchFound; @@ -1624,7 +1676,7 @@ public class SeqCanvas extends JComponent implements ViewportListenerI public void propertyChange(PropertyChangeEvent evt) { String eventName = evt.getPropertyName(); - + // System.err.println(">>SeqCanvas propertyChange " + eventName); if (eventName.equals(SequenceGroup.SEQ_GROUP_CHANGED)) { fastPaint = true; @@ -1634,6 +1686,7 @@ public class SeqCanvas extends JComponent implements ViewportListenerI else if (eventName.equals(ViewportRanges.MOVE_VIEWPORT)) { fastPaint = false; + // System.err.println("!!!! fastPaint false from MOVE_VIEWPORT"); repaint(); return; } @@ -1655,7 +1708,7 @@ public class SeqCanvas extends JComponent implements ViewportListenerI } ViewportRanges vpRanges = av.getRanges(); - int range = vpRanges.getEndRes() - vpRanges.getStartRes(); + int range = vpRanges.getEndRes() - vpRanges.getStartRes() + 1; if (scrollX > range) { scrollX = range; @@ -1665,37 +1718,37 @@ public class SeqCanvas extends JComponent implements ViewportListenerI scrollX = -range; } } - // Both scrolling and resizing change viewport ranges: scrolling changes - // both start and end points, but resize only changes end values. - // Here we only want to fastpaint on a scroll, with resize using a normal - // paint, so scroll events are identified as changes to the horizontal or - // vertical start value. - if (eventName.equals(ViewportRanges.STARTRES)) + // Both scrolling and resizing change viewport ranges: scrolling changes + // both start and end points, but resize only changes end values. + // Here we only want to fastpaint on a scroll, with resize using a normal + // paint, so scroll events are identified as changes to the horizontal or + // vertical start value. + if (eventName.equals(ViewportRanges.STARTRES)) + { + if (av.getWrapAlignment()) { - if (av.getWrapAlignment()) - { - fastPaintWrapped(scrollX); - } - else - { - fastPaint(scrollX, 0); - } + fastPaintWrapped(scrollX); } - else if (eventName.equals(ViewportRanges.STARTSEQ)) + else + { + fastPaint(scrollX, 0); + } + } + else if (eventName.equals(ViewportRanges.STARTSEQ)) + { + // scroll + fastPaint(0, (int) evt.getNewValue() - (int) evt.getOldValue()); + } + else if (eventName.equals(ViewportRanges.STARTRESANDSEQ)) + { + if (av.getWrapAlignment()) { - // scroll - fastPaint(0, (int) evt.getNewValue() - (int) evt.getOldValue()); + fastPaintWrapped(scrollX); } - else if (eventName.equals(ViewportRanges.STARTRESANDSEQ)) + else { - if (av.getWrapAlignment()) - { - fastPaintWrapped(scrollX); - } - else - { - fastPaint(scrollX, 0); - } + fastPaint(scrollX, 0); + } } else if (eventName.equals(ViewportRanges.STARTSEQ)) { @@ -1724,10 +1777,10 @@ public class SeqCanvas extends JComponent implements ViewportListenerI { ViewportRanges ranges = av.getRanges(); - if (Math.abs(scrollX) > ranges.getViewportWidth()) + if (Math.abs(scrollX) >= ranges.getViewportWidth()) { /* - * shift of more than one view width is + * shift of one view width or more is * overcomplicated to handle in this method */ fastPaint = false; @@ -1735,7 +1788,7 @@ public class SeqCanvas extends JComponent implements ViewportListenerI return; } - if (fastpainting || gg == null) + if (fastpainting || img == null) { return; } @@ -1745,6 +1798,9 @@ public class SeqCanvas extends JComponent implements ViewportListenerI try { + + Graphics gg = img.getGraphics(); + calculateWrappedGeometry(getWidth(), getHeight()); /* @@ -1773,6 +1829,8 @@ public class SeqCanvas extends JComponent implements ViewportListenerI */ drawWrappedDecorators(gg, ranges.getStartRes()); + gg.dispose(); + repaint(); } finally { @@ -1796,6 +1854,8 @@ public class SeqCanvas extends JComponent implements ViewportListenerI return; } + Graphics gg = img.getGraphics(); + ViewportRanges ranges = av.getRanges(); int viewportWidth = ranges.getViewportWidth(); int charWidth = av.getCharWidth(); @@ -1822,6 +1882,8 @@ public class SeqCanvas extends JComponent implements ViewportListenerI /* * white fill first to erase annotations */ + + gg.translate(xOffset, 0); gg.setColor(Color.white); gg.fillRect(labelWidthWest, ypos, @@ -1829,6 +1891,7 @@ public class SeqCanvas extends JComponent implements ViewportListenerI gg.translate(-xOffset, 0); drawWrappedWidth(gg, ypos, startRes, endRes, canvasHeight); + } /* @@ -1872,7 +1935,8 @@ public class SeqCanvas extends JComponent implements ViewportListenerI gg.setColor(Color.white); gg.fillRect(0, canvasHeight - heightBelow, getWidth(), heightBelow); } - } + gg.dispose(); + } /** * Shifts the visible alignment by the specified number of columns - left if @@ -1888,6 +1952,9 @@ public class SeqCanvas extends JComponent implements ViewportListenerI { return; } + + Graphics gg = img.getGraphics(); + int charWidth = av.getCharWidth(); int canvasHeight = getHeight(); @@ -1918,10 +1985,17 @@ public class SeqCanvas extends JComponent implements ViewportListenerI while (y >= 0) { + /* + * shift 'widthToCopy' residues by 'positions' places to the right + */ gg.copyArea(copyFromLeftStart, y, widthToCopy, heightToCopy, positions * charWidth, 0); if (y > 0) { + /* + * copy 'positions' residue from the row above (right hand end) + * to this row's left hand end + */ gg.copyArea(copyFromRightStart, y - wrappedRepeatHeightPx, positions * charWidth, heightToCopy, -widthToCopy, wrappedRepeatHeightPx); @@ -1954,11 +2028,11 @@ public class SeqCanvas extends JComponent implements ViewportListenerI * charWidth, heightToCopy, widthToCopy, -wrappedRepeatHeightPx); } - y += wrappedRepeatHeightPx; xpos += viewportWidth; } } + gg.dispose(); } @@ -1974,7 +2048,7 @@ public class SeqCanvas extends JComponent implements ViewportListenerI */ protected boolean drawMappedPositionsWrapped(SearchResultsI results) { - if ((results == null) || (gg == null)) // JAL-2784 check gg is not null + if ((results == null) || (img == null)) // JAL-2784 check gg is not null { return false; } @@ -2009,6 +2083,9 @@ public class SeqCanvas extends JComponent implements ViewportListenerI int gapHeight = charHeight * (av.getScaleAboveWrapped() ? 2 : 1); + + Graphics gg = img.getGraphics(); + for (int seqNo = ranges.getStartSeq(); seqNo <= ranges .getEndSeq(); seqNo++) { @@ -2079,6 +2156,8 @@ public class SeqCanvas extends JComponent implements ViewportListenerI } } + gg.dispose(); + return matchFound; } @@ -2091,4 +2170,5 @@ public class SeqCanvas extends JComponent implements ViewportListenerI { return labelWidthWest; } + }