X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fgui%2FSequenceRenderer.java;h=c27c16b3025c2a08be0149256d9d8c63296e3ffb;hb=aebfd3e1071a70f850b5ef051f9c70bd5e027706;hp=5bb0de7bf706b90d809a073c7a6c7ab6c550ead0;hpb=35b449c8fce9a00abd16412ba804936325997b11;p=jalview.git

diff --git a/src/jalview/gui/SequenceRenderer.java b/src/jalview/gui/SequenceRenderer.java
index 5bb0de7..c27c16b 100755
--- a/src/jalview/gui/SequenceRenderer.java
+++ b/src/jalview/gui/SequenceRenderer.java
@@ -95,7 +95,8 @@ public class SequenceRenderer implements jalview.api.SequenceRenderer
   public Color getResidueColour(final SequenceI seq, int position,
           FeatureColourFinder finder)
   {
-    return resColourFinder.getResidueColour(av.getResidueShading(),
+    return resColourFinder.getResidueColour(av.getShowBoxes(),
+            av.getResidueShading(),
             allGroups, seq, position,
             finder);
   }