X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fgui%2FSliderPanel.java;h=af6bfff9e43ae3e5c5560c1f6d0a1db7b54b16a7;hb=a23cc416cd520ac6dec6052591575b264f5d25bc;hp=6d4b97567ab06b78c4139db3c6a29ae246e40801;hpb=e542a2b9968ee6a7def19e79e84c27684ee686e3;p=jalview.git
diff --git a/src/jalview/gui/SliderPanel.java b/src/jalview/gui/SliderPanel.java
index 6d4b975..af6bfff 100755
--- a/src/jalview/gui/SliderPanel.java
+++ b/src/jalview/gui/SliderPanel.java
@@ -1,236 +1,370 @@
-package jalview.gui;
-
-import jalview.jbgui.*;
-import jalview.schemes.*;
-import jalview.datamodel.*;
-import java.awt.event.*;
-import javax.swing.event.*;
-import javax.swing.*;
-import java.util.*;
-
-public class SliderPanel extends GSliderPanel
-{
- AlignmentPanel ap;
- boolean forConservation = true;
- ColourSchemeI cs;
-
- static JInternalFrame conservationSlider;
- static JInternalFrame PIDSlider;
-
- public static int setConservationSlider(AlignmentPanel ap, ColourSchemeI cs, String source)
- {
- SliderPanel sp = null;
- ConservationColourScheme ccs = (ConservationColourScheme)cs;
- int value = ccs.inc;
-
- if(conservationSlider == null)
- {
- sp = new SliderPanel(ap, value, true, cs);
- conservationSlider = new JInternalFrame();
- conservationSlider.setContentPane(sp);
- conservationSlider.setLayer(JLayeredPane.PALETTE_LAYER);
- }
- else
- {
- sp = (SliderPanel)conservationSlider.getContentPane();
- sp.cs = cs;
- sp.setValue(value);
- }
-
- conservationSlider.setTitle("Conservation Colour Increment ("+source+")");
- if(ap.av.alignment.getGroups()!=null)
- sp.setAllGroupsCheckEnabled( true );
- else
- sp.setAllGroupsCheckEnabled( false);
-
- return sp.getValue();
- }
-
- public static void showConservationSlider()
- {
- try{
- PIDSlider.setClosed(true);
- PIDSlider = null;
- }catch(Exception ex){}
-
-
- if(!conservationSlider.isVisible())
- {
- Desktop.addInternalFrame(conservationSlider, conservationSlider.getTitle(), 420, 90, false);
- conservationSlider.addInternalFrameListener(new javax.swing.event.
- InternalFrameAdapter()
- {
- public void internalFrameClosed(javax.swing.event.InternalFrameEvent e)
- {
- conservationSlider = null;
- }
- });
- conservationSlider.setLayer(JLayeredPane.PALETTE_LAYER);
- }
-
- }
-
- public static int setPIDSliderSource(AlignmentPanel ap, ColourSchemeI cs, String source)
- {
- SliderPanel pid = null;
-
- int threshold = 50;
- if (cs instanceof ResidueColourScheme)
- threshold = ( ( (ResidueColourScheme) cs).getThreshold());
- else if (cs instanceof ScoreColourScheme)
- threshold = ( ( (ScoreColourScheme) cs).getThreshold());
-
-
- if(PIDSlider == null)
- {
- pid = new SliderPanel(ap, threshold, false, cs);
- PIDSlider = new JInternalFrame();
- PIDSlider.setContentPane(pid);
- PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER);
- }
- else
- {
- pid = (SliderPanel)PIDSlider.getContentPane();
- pid.cs = cs;
- }
- PIDSlider.setTitle("Percentage Identity Threshold ("+source+")");
-
- if (ap.av.alignment.getGroups() != null)
- pid.setAllGroupsCheckEnabled(true);
- else
- pid.setAllGroupsCheckEnabled(false);
-
- return pid.getValue();
-
- }
-
- public static void showPIDSlider()
- {
- try{
- conservationSlider.setClosed(true);
- conservationSlider = null;
- }catch(Exception ex){}
-
- if(!PIDSlider.isVisible())
- {
- Desktop.addInternalFrame(PIDSlider, PIDSlider.getTitle(), 420, 90, false);
- PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER);
- PIDSlider.addInternalFrameListener(new javax.swing.event.
- InternalFrameAdapter()
- {
- public void internalFrameClosed(javax.swing.event.InternalFrameEvent e)
- {
- PIDSlider = null;
- }
- });
- PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER);
- }
-
- }
-
-
- public SliderPanel(AlignmentPanel ap, int value, boolean forConserve, ColourSchemeI cs)
- {
- this.ap = ap;
- this.cs = cs;
- forConservation = forConserve;
- undoButton.setVisible(false);
- applyButton.setVisible(false);
- if(forConservation)
- {
- label.setText("Enter value to increase conservation visibility");
- slider.setMinimum(0);
- slider.setMaximum(50);
- }
- else
- {
- label.setText("Enter % identity above which to colour residues");
- slider.setMinimum(0);
- slider.setMaximum(100);
- }
-
-
-
- slider.addChangeListener( new ChangeListener()
- {
- public void stateChanged(ChangeEvent evt)
- {
- valueField.setText( slider.getValue()+"" );
- valueChanged( slider.getValue() );
- }
- });
-
- slider.setValue(value);
- valueField.setText(value+"");
- }
-
- public void valueChanged(int i)
- {
- if(cs == null)
- return;
-
- ColourSchemeI toChange = null;
- Vector allGroups = null;
- int groupIndex = 0;
-
- if(allGroupsCheck.isSelected())
- {
- allGroups = ap.av.alignment.getGroups();
- groupIndex = allGroups.size()-1;
- }
- else
- toChange = cs;
-
-
- while( groupIndex > -1 )
- {
- if(allGroups!=null)
- toChange = ((SequenceGroup)allGroups.get(groupIndex)).cs;
-
- if (forConservation)
- {
- if (toChange instanceof ConservationColourScheme)
- ( (ConservationColourScheme) toChange).inc = i;
- }
- else
- {
- if (toChange.canThreshold())
- ( (ResidueColourScheme) toChange).setThreshold(i);
- }
-
- groupIndex--;
- }
-
- ap.seqPanel.repaint();
-
- }
-
- public void setAllGroupsCheckEnabled(boolean b)
- {
- allGroupsCheck.setEnabled(b);
- }
-
-
- public void valueField_actionPerformed(ActionEvent e)
- {
- try{
- int i = Integer.parseInt(valueField.getText());
- slider.setValue(i);
- }
- catch(Exception ex)
- {
- valueField.setText( slider.getValue()+"" );
- }
- }
-
- public void setValue(int value)
- {
- slider.setValue(value);
- }
- public int getValue()
- {
- return Integer.parseInt(valueField.getText());
- }
-
-
-}
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package jalview.gui;
+
+import jalview.datamodel.SequenceGroup;
+import jalview.jbgui.GSliderPanel;
+import jalview.schemes.ColourSchemeI;
+import jalview.util.MessageManager;
+
+import java.awt.event.ActionEvent;
+import java.awt.event.MouseAdapter;
+import java.awt.event.MouseEvent;
+import java.util.Iterator;
+
+import javax.swing.JInternalFrame;
+import javax.swing.JLayeredPane;
+import javax.swing.event.ChangeEvent;
+import javax.swing.event.ChangeListener;
+
+/**
+ * DOCUMENT ME!
+ *
+ * @author $author$
+ * @version $Revision$
+ */
+public class SliderPanel extends GSliderPanel
+{
+ static JInternalFrame conservationSlider;
+
+ static JInternalFrame PIDSlider;
+
+ AlignmentPanel ap;
+
+ boolean forConservation = true;
+
+ ColourSchemeI cs;
+
+ /**
+ * Creates a new SliderPanel object.
+ *
+ * @param ap
+ * DOCUMENT ME!
+ * @param value
+ * DOCUMENT ME!
+ * @param forConserve
+ * DOCUMENT ME!
+ * @param cs
+ * DOCUMENT ME!
+ */
+ public SliderPanel(final AlignmentPanel ap, int value,
+ boolean forConserve, ColourSchemeI cs)
+ {
+ this.ap = ap;
+ this.cs = cs;
+ forConservation = forConserve;
+ undoButton.setVisible(false);
+ applyButton.setVisible(false);
+
+ if (forConservation)
+ {
+ label.setText(MessageManager
+ .getString("label.enter_value_increase_conservation_visibility"));
+ slider.setMinimum(0);
+ slider.setMaximum(100);
+ }
+ else
+ {
+ label.setText(MessageManager
+ .getString("label.enter_percentage_identity_above_which_colour_residues"));
+ slider.setMinimum(0);
+ slider.setMaximum(100);
+ }
+
+ slider.addChangeListener(new ChangeListener()
+ {
+ public void stateChanged(ChangeEvent evt)
+ {
+ valueField.setText(slider.getValue() + "");
+ valueChanged(slider.getValue());
+ }
+ });
+
+ slider.addMouseListener(new MouseAdapter()
+ {
+ public void mouseReleased(MouseEvent evt)
+ {
+ ap.paintAlignment(true);
+ }
+ });
+
+ slider.setValue(value);
+ valueField.setText(value + "");
+ }
+
+ /**
+ * DOCUMENT ME!
+ *
+ * @param ap
+ * DOCUMENT ME!
+ * @param cs
+ * DOCUMENT ME!
+ * @param source
+ * DOCUMENT ME!
+ *
+ * @return DOCUMENT ME!
+ */
+ public static int setConservationSlider(AlignmentPanel ap,
+ ColourSchemeI cs, String source)
+ {
+ SliderPanel sp = null;
+
+ if (conservationSlider == null)
+ {
+ sp = new SliderPanel(ap, cs.getConservationInc(), true, cs);
+ conservationSlider = new JInternalFrame();
+ conservationSlider.setContentPane(sp);
+ conservationSlider.setLayer(JLayeredPane.PALETTE_LAYER);
+ }
+ else
+ {
+ sp = (SliderPanel) conservationSlider.getContentPane();
+ sp.cs = cs;
+ }
+
+ conservationSlider.setTitle(MessageManager.formatMessage("label.conservation_colour_increment", new String[]{source}));
+
+ if (ap.av.getAlignment().getGroups() != null)
+ {
+ sp.setAllGroupsCheckEnabled(true);
+ }
+ else
+ {
+ sp.setAllGroupsCheckEnabled(false);
+ }
+
+ return sp.getValue();
+ }
+
+ /**
+ * DOCUMENT ME!
+ */
+ public static void showConservationSlider()
+ {
+ try
+ {
+ PIDSlider.setClosed(true);
+ PIDSlider = null;
+ } catch (Exception ex)
+ {
+ }
+
+ if (!conservationSlider.isVisible())
+ {
+ Desktop.addInternalFrame(conservationSlider,
+ conservationSlider.getTitle(), 420, 90, false);
+ conservationSlider
+ .addInternalFrameListener(new javax.swing.event.InternalFrameAdapter()
+ {
+ public void internalFrameClosed(
+ javax.swing.event.InternalFrameEvent e)
+ {
+ conservationSlider = null;
+ }
+ });
+ conservationSlider.setLayer(JLayeredPane.PALETTE_LAYER);
+ }
+ }
+
+ /**
+ * DOCUMENT ME!
+ *
+ * @param ap
+ * DOCUMENT ME!
+ * @param cs
+ * DOCUMENT ME!
+ * @param source
+ * DOCUMENT ME!
+ *
+ * @return DOCUMENT ME!
+ */
+ public static int setPIDSliderSource(AlignmentPanel ap, ColourSchemeI cs,
+ String source)
+ {
+ SliderPanel pid = null;
+
+ int threshold = cs.getThreshold();
+
+ if (PIDSlider == null)
+ {
+ pid = new SliderPanel(ap, threshold, false, cs);
+ PIDSlider = new JInternalFrame();
+ PIDSlider.setContentPane(pid);
+ PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER);
+ }
+ else
+ {
+ pid = (SliderPanel) PIDSlider.getContentPane();
+ pid.cs = cs;
+ }
+
+ PIDSlider.setTitle(MessageManager.formatMessage("label.percentage_identity_thereshold", new String[]{source}));
+
+ if (ap.av.getAlignment().getGroups() != null)
+ {
+ pid.setAllGroupsCheckEnabled(true);
+ }
+ else
+ {
+ pid.setAllGroupsCheckEnabled(false);
+ }
+
+ return pid.getValue();
+ }
+
+ /**
+ * DOCUMENT ME!
+ */
+ public static void showPIDSlider()
+ {
+ try
+ {
+ conservationSlider.setClosed(true);
+ conservationSlider = null;
+ } catch (Exception ex)
+ {
+ }
+
+ if (!PIDSlider.isVisible())
+ {
+ Desktop.addInternalFrame(PIDSlider, PIDSlider.getTitle(), 420, 90,
+ false);
+ PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER);
+ PIDSlider
+ .addInternalFrameListener(new javax.swing.event.InternalFrameAdapter()
+ {
+ public void internalFrameClosed(
+ javax.swing.event.InternalFrameEvent e)
+ {
+ PIDSlider = null;
+ }
+ });
+ PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER);
+ }
+ }
+
+ /**
+ * DOCUMENT ME!
+ *
+ * @param i
+ * DOCUMENT ME!
+ */
+ public void valueChanged(int i)
+ {
+ if (cs == null)
+ {
+ return;
+ }
+
+ ColourSchemeI toChange = cs;
+ Iterator allGroups = null;
+
+ if (allGroupsCheck.isSelected())
+ {
+ allGroups = ap.av.getAlignment().getGroups().listIterator();
+ }
+
+ while (toChange != null)
+ {
+ if (forConservation)
+ {
+ toChange.setConservationInc(i);
+ }
+ else
+ {
+ toChange.setThreshold(i, ap.av.isIgnoreGapsConsensus());
+ }
+ if (allGroups != null && allGroups.hasNext())
+ {
+ while ((toChange = allGroups.next().cs) == null
+ && allGroups.hasNext())
+ {
+ ;
+ }
+ }
+ else
+ {
+ toChange = null;
+ }
+ }
+
+ ap.getSeqPanel().seqCanvas.repaint();
+ }
+
+ /**
+ * DOCUMENT ME!
+ *
+ * @param b
+ * DOCUMENT ME!
+ */
+ public void setAllGroupsCheckEnabled(boolean b)
+ {
+ allGroupsCheck.setEnabled(b);
+ }
+
+ /**
+ * DOCUMENT ME!
+ *
+ * @param e
+ * DOCUMENT ME!
+ */
+ public void valueField_actionPerformed(ActionEvent e)
+ {
+ try
+ {
+ int i = Integer.parseInt(valueField.getText());
+ slider.setValue(i);
+ } catch (NumberFormatException ex)
+ {
+ valueField.setText(slider.getValue() + "");
+ }
+ }
+
+ /**
+ * DOCUMENT ME!
+ *
+ * @param value
+ * DOCUMENT ME!
+ */
+ public void setValue(int value)
+ {
+ slider.setValue(value);
+ }
+
+ /**
+ * DOCUMENT ME!
+ *
+ * @return DOCUMENT ME!
+ */
+ public int getValue()
+ {
+ return Integer.parseInt(valueField.getText());
+ }
+
+ public void slider_mouseReleased(MouseEvent e)
+ {
+ if (ap.overviewPanel != null)
+ {
+ ap.overviewPanel.updateOverviewImage();
+ }
+ }
+
+}