X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fgui%2FStructureViewerBase.java;h=e73ce07bcee5dddc98d8a078295d55de919061de;hb=42498abb930c08393b09fc7af2564b7f210ac294;hp=c52be92becd51371c359f0624dfc5787f3d1466b;hpb=865633cd6ddc767e82ac3fd265ac2d9400a25198;p=jalview.git

diff --git a/src/jalview/gui/StructureViewerBase.java b/src/jalview/gui/StructureViewerBase.java
index c52be92..e73ce07 100644
--- a/src/jalview/gui/StructureViewerBase.java
+++ b/src/jalview/gui/StructureViewerBase.java
@@ -23,7 +23,7 @@ package jalview.gui;
 import jalview.bin.Cache;
 import jalview.datamodel.Alignment;
 import jalview.datamodel.AlignmentI;
-import jalview.datamodel.ColumnSelection;
+import jalview.datamodel.HiddenColumns;
 import jalview.datamodel.PDBEntry;
 import jalview.datamodel.SequenceI;
 import jalview.gui.StructureViewer.ViewerType;
@@ -812,7 +812,7 @@ public abstract class StructureViewerBase extends GStructureViewer
     try
     {
       AlignmentI[] als = new Alignment[_alignwith.size()];
-      ColumnSelection[] alc = new ColumnSelection[_alignwith.size()];
+      HiddenColumns[] alc = new HiddenColumns[_alignwith.size()];
       int[] alm = new int[_alignwith.size()];
       int a = 0;
   
@@ -820,7 +820,7 @@ public abstract class StructureViewerBase extends GStructureViewer
       {
         als[a] = ap.av.getAlignment();
         alm[a] = -1;
-        alc[a++] = ap.av.getColumnSelection();
+        alc[a++] = ap.av.getAlignment().getHiddenColumns();
       }
       reply = getBinding().superposeStructures(als, alm, alc);
       if (reply != null)