X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fgui%2FTextColourChooser.java;h=56bc5fb65231e636a3c7712d0310c1a7aa69747a;hb=b57a02c25e335d033c97f8a6bacd6b54f62bd2b6;hp=3ada67e468cf3e9306ceab5ea339d539c9e32fc8;hpb=d053a3c980cf4318b9a19a255f9fc870e74de989;p=jalview.git

diff --git a/src/jalview/gui/TextColourChooser.java b/src/jalview/gui/TextColourChooser.java
index 3ada67e..56bc5fb 100644
--- a/src/jalview/gui/TextColourChooser.java
+++ b/src/jalview/gui/TextColourChooser.java
@@ -137,7 +137,7 @@ public class TextColourChooser
     if (sg == null)
     {
       ap.av.textColour = col;
-      if (ap.av.colourAppliesToAllGroups)
+      if (ap.av.getColourAppliesToAllGroups())
       {
         setGroupTextColour();
       }
@@ -155,7 +155,7 @@ public class TextColourChooser
     if (sg == null)
     {
       ap.av.textColour2 = col;
-      if (ap.av.colourAppliesToAllGroups)
+      if (ap.av.getColourAppliesToAllGroups())
       {
         setGroupTextColour();
       }
@@ -173,7 +173,7 @@ public class TextColourChooser
     if (sg == null)
     {
       ap.av.thresholdTextColour = value;
-      if (ap.av.colourAppliesToAllGroups)
+      if (ap.av.getColourAppliesToAllGroups())
       {
         setGroupTextColour();
       }
@@ -193,11 +193,8 @@ public class TextColourChooser
       return;
     }
 
-    Vector groups = ap.av.getAlignment().getGroups();
-
-    for (int i = 0; i < groups.size(); i++)
+    for (SequenceGroup sg : ap.av.getAlignment().getGroups())
     {
-      SequenceGroup sg = (SequenceGroup) groups.elementAt(i);
       sg.textColour = ap.av.textColour;
       sg.textColour2 = ap.av.textColour2;
       sg.thresholdTextColour = ap.av.thresholdTextColour;