X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fgui%2FVamsasApplication.java;h=f9a4281f7cc5e9bacc9557f0f0ef972374b61b9e;hb=bc1a3842b31a35a7794f4afec4911ad421c7c3e4;hp=8a8ba8dfc1970b4f1fd02a843855a42c242fa041;hpb=57738a1f3c19b1c3a00bd3ac5108f8cd0af32f99;p=jalview.git

diff --git a/src/jalview/gui/VamsasApplication.java b/src/jalview/gui/VamsasApplication.java
index 8a8ba8d..f9a4281 100644
--- a/src/jalview/gui/VamsasApplication.java
+++ b/src/jalview/gui/VamsasApplication.java
@@ -614,7 +614,7 @@ public class VamsasApplication implements SelectionSource, VamsasSource
       cdoc = null;
     } catch (Exception ee)
     {
-      System.err.println("Exception whilst updating :");
+      jalview.bin.Console.errPrintln("Exception whilst updating :");
       ee.printStackTrace(System.err);
       // recover object map backup, since its probably corrupted with references
       // to Vobjects that don't exist anymore.
@@ -803,7 +803,8 @@ public class VamsasApplication implements SelectionSource, VamsasSource
               // we only care about AlignmentSequence selections
               SelectionMessage sm = (SelectionMessage) message;
               sm.validate();
-              System.err.println("Received\n" + sm.getRawMessage());
+              jalview.bin.Console
+                      .errPrintln("Received\n" + sm.getRawMessage());
               Object[] jvobjs = sm.getVorbaIDs() == null ? null
                       : new Object[sm.getVorbaIDs().length];
               if (jvobjs == null)