X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fio%2FAlignFile.java;h=6c1a3431d9cf2f12e8c05e905a5b7bc83e32ad49;hb=ef0377ec8e57164363e74c33d6ede31f85e8ccf7;hp=3ef721003a82c83babb5a951563de6ff79ff3c2a;hpb=a79f9e113c51c032070c670e45ce3eb464691166;p=jalview.git

diff --git a/src/jalview/io/AlignFile.java b/src/jalview/io/AlignFile.java
index 3ef7210..6c1a343 100755
--- a/src/jalview/io/AlignFile.java
+++ b/src/jalview/io/AlignFile.java
@@ -1,13 +1,13 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
+ * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
@@ -81,8 +81,9 @@ public abstract class AlignFile extends FileParse
     initData();
     parse();
     // sets the index of each sequence in the alignment
-    for( int i=0,c=seqs.size(); i<c; i++ ) {  
-    	seqs.get(i).setIndex(i);  
+    for (int i = 0, c = seqs.size(); i < c; i++)
+    {
+      seqs.get(i).setIndex(i);
     }
   }
 
@@ -99,8 +100,9 @@ public abstract class AlignFile extends FileParse
     initData();
     parse();
     // sets the index of each sequence in the alignment
-    for( int i=0,c=seqs.size(); i<c; i++ ) {  
-    	seqs.get(i).setIndex(i);  
+    for (int i = 0, c = seqs.size(); i < c; i++)
+    {
+      seqs.get(i).setIndex(i);
     }
   }