X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fio%2FAlignmentProperties.java;h=9eb6d25937af368408527dde0596ddb2ce9aedd5;hb=59d682209891099d46b960509907c79e3fb276fe;hp=3b25b494020102dc33c9ccaa06fa0bc64f517fee;hpb=a7bbd448b7b2b0888a47af48d70354b7df22ab83;p=jalview.git

diff --git a/src/jalview/io/AlignmentProperties.java b/src/jalview/io/AlignmentProperties.java
index 3b25b49..9eb6d25 100644
--- a/src/jalview/io/AlignmentProperties.java
+++ b/src/jalview/io/AlignmentProperties.java
@@ -1,5 +1,19 @@
-/**
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
+ * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
+ * 
+ * This file is part of Jalview.
  * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  */
 package jalview.io;
 
@@ -13,8 +27,10 @@ import jalview.datamodel.Alignment;
 import jalview.datamodel.AlignmentI;
 
 /**
- * Render associated attributes of an alignment. The heart of this code was refactored from jalview.gui.AlignFrame and jalview.appletgui.AlignFrame 
- * TODO: consider extending the html renderer to annotate elements with CSS ids enabling finer output format control.
+ * Render associated attributes of an alignment. The heart of this code was
+ * refactored from jalview.gui.AlignFrame and jalview.appletgui.AlignFrame TODO:
+ * consider extending the html renderer to annotate elements with CSS ids
+ * enabling finer output format control.
  * 
  */
 public class AlignmentProperties
@@ -28,12 +44,13 @@ public class AlignmentProperties
 
   /**
    * render the alignment's properties report as text or an HTML fragment
+   * 
    * @param pw
    * @param html
    */
   public void writeProperties(PrintWriter pw, boolean html)
   {
-    final String nl = html ? "<br>" : "\n";
+    final String nl = html ? "<br>" : System.getProperty("line.separator");
     float avg = 0;
     int min = Integer.MAX_VALUE, max = 0;
     for (int i = 0; i < alignment.getHeight(); i++)
@@ -93,7 +110,7 @@ public class AlignmentProperties
         }
         else
         {
-          pw.print("\n" + key + "\t" + vals);
+          pw.print(nl + key + "\t" + vals);
         }
       }
       if (html)