X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fio%2FAlignmentProperties.java;h=f2a6150dc69dd4254ba9da1f59c6e12dff91368a;hb=ecdc8f7020e2fe1b510e03635801528a08480ec8;hp=45d46d86a4e036097e171ab9f87fee6bcd4438f5;hpb=6c889c6524f1ba8f56dbea5211b44753846a1bdf;p=jalview.git
diff --git a/src/jalview/io/AlignmentProperties.java b/src/jalview/io/AlignmentProperties.java
index 45d46d8..f2a6150 100644
--- a/src/jalview/io/AlignmentProperties.java
+++ b/src/jalview/io/AlignmentProperties.java
@@ -1,20 +1,38 @@
-/**
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
*
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see
" : "\n";
+ final String nl = html ? "
" : System.getProperty("line.separator");
float avg = 0;
int min = Integer.MAX_VALUE, max = 0;
for (int i = 0; i < alignment.getHeight(); i++)
@@ -42,27 +61,31 @@ public class AlignmentProperties
- alignment.getSequenceAt(i).getStart();
avg += size;
if (size > max)
+ {
max = size;
+ }
if (size < min)
+ {
min = size;
+ }
}
- avg = avg / (float) alignment.getHeight();
- pw.append(nl);
- pw.append("Sequences: " + alignment.getHeight());
- pw.append(nl);
- pw.append("Minimum Sequence Length: " + min);
- pw.append(nl);
- pw.append("Maximum Sequence Length: " + max);
- pw.append(nl);
- pw.append("Average Length: " + (int) avg);
+ avg = avg / alignment.getHeight();
+ pw.print(nl);
+ pw.print("Sequences: " + alignment.getHeight());
+ pw.print(nl);
+ pw.print("Minimum Sequence Length: " + min);
+ pw.print(nl);
+ pw.print("Maximum Sequence Length: " + max);
+ pw.print(nl);
+ pw.print("Average Length: " + (int) avg);
if (((Alignment) alignment).alignmentProperties != null)
{
- pw.append(nl);
- pw.append(nl);
+ pw.print(nl);
+ pw.print(nl);
if (html)
{
- pw.append("
" + key + " | " + val + " |
" + key + " | " + val + " |