X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fio%2FDBRefFetcher.java;h=d57f3be2e97716dcd1208f0e59bdc85c098a5189;hb=fbb18baad3919cbf94fcb5159bbd5269d6af18b4;hp=805e78dfc07b80a56868a824c327d0e40d9b2464;hpb=174230b4233d9ce80f94527768d2cd2f76da11ab;p=jalview.git

diff --git a/src/jalview/io/DBRefFetcher.java b/src/jalview/io/DBRefFetcher.java
index 805e78d..d57f3be 100644
--- a/src/jalview/io/DBRefFetcher.java
+++ b/src/jalview/io/DBRefFetcher.java
@@ -292,7 +292,7 @@ public class DBRefFetcher implements Runnable
       System.out.println("Adding dbref to "+sequence[m].getName()+" : "+
                          entry.getAccession().elementAt(0).toString());
 
-      String nonGapped = AlignSeq.extractGaps("-. ", sequence[m].getSequence());
+      String nonGapped = AlignSeq.extractGaps("-. ", sequence[m].getSequence()).toUpperCase();
 
       int absStart = entry.getUniprotSequence().getContent().indexOf(
           nonGapped.toString());