X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fio%2FEmblFlatFile.java;h=33701f6934c991f3918174c268523b544d9073bf;hb=40892424a98ce7583cfb2f56c18840aa891c1304;hp=19496ef83b1e3806e6db7d2ff673e5a945550ada;hpb=da62703518a88707b9144bc51e50d6af7093a7c7;p=jalview.git

diff --git a/src/jalview/io/EmblFlatFile.java b/src/jalview/io/EmblFlatFile.java
index 19496ef..33701f6 100644
--- a/src/jalview/io/EmblFlatFile.java
+++ b/src/jalview/io/EmblFlatFile.java
@@ -1,8 +1,28 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.io;
 
 import java.io.IOException;
 
-import jalview.bin.Cache;
+import jalview.bin.Console;
 import jalview.datamodel.DBRefEntry;
 import jalview.util.DBRefUtils;
 
@@ -25,7 +45,7 @@ import jalview.util.DBRefUtils;
  * @see ftp://ftp.ebi.ac.uk/pub/databases/ena/sequence/release/doc/usrman.txt
  * @see ftp://ftp.ebi.ac.uk/pub/databases/embl/doc/FT_current.html
  */
-public class EmblFlatFile extends FlatFile
+public class EmblFlatFile extends EMBLLikeFlatFile
 {
   /**
    * Constructor given a data source and the id of the source database
@@ -124,7 +144,7 @@ public class EmblFlatFile extends FlatFile
         this.length = Integer.valueOf(bits[0]);
       } catch (NumberFormatException e)
       {
-        Cache.log.error("bad length read in flatfile, line: " + line);
+        Console.error("bad length read in flatfile, line: " + line);
       }
     }