X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fio%2FFeaturesFile.java;h=4497bc72daac62ec70318c05c2677c1d8708066f;hb=608832fec5a504b4c56e5837b2b3dfc1993fe734;hp=7299628f8ddcb6edf5d40162e432b703abd9b124;hpb=b1314f2aa829a8ccbb1816c6254c28f988967154;p=jalview.git

diff --git a/src/jalview/io/FeaturesFile.java b/src/jalview/io/FeaturesFile.java
index 7299628..4497bc7 100755
--- a/src/jalview/io/FeaturesFile.java
+++ b/src/jalview/io/FeaturesFile.java
@@ -383,7 +383,29 @@ public class FeaturesFile extends AlignFile
                 if(next[j].description==null || next[j].description.equals(""))
                   out.append(next[j].type+"\t");
                 else
-                  out.append(next[j].description + "\t");
+                {
+                  out.append(next[j].description+" ");
+                  if(next[j].links!=null)
+                    {
+                      for(int l=0; l<next[j].links.size(); l++)
+                      {
+                        String label = next[j].links.elementAt(l).toString();
+                        String href = label.substring(label.indexOf("|")+1);
+                        label = label.substring(0, label.indexOf("|"));
+
+                        if(next[j].description.indexOf(href)==-1)
+                        {
+                          out.append("<a href=\""
+                                     + href
+                                     + "\">"
+                                     + label
+                                     + "</a>");
+                        }
+                      }
+                    }
+                   out.append("\t");
+                }
+
 
                 out.append(  seqs[i].getName() + "\t-1\t"
                            + next[j].begin + "\t"