X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fio%2FFeaturesFile.java;h=dda59a760d1f729f844dacf8ee853494744176a1;hb=e09a3103605a8b6ca54b824b7bb6a75c5f35957a;hp=c08c84e32771b43dd0e02e04ddd8e2e9a833852d;hpb=65740880573a48adc758bec3939ece9d9ae104dd;p=jalview.git

diff --git a/src/jalview/io/FeaturesFile.java b/src/jalview/io/FeaturesFile.java
index c08c84e..dda59a7 100755
--- a/src/jalview/io/FeaturesFile.java
+++ b/src/jalview/io/FeaturesFile.java
@@ -20,6 +20,8 @@
  */
 package jalview.io;
 
+import java.util.Locale;
+
 import java.awt.Color;
 import java.io.IOException;
 import java.util.ArrayList;
@@ -234,7 +236,7 @@ public class FeaturesFile extends AlignFile implements FeaturesSourceI
         // skip comments/process pragmas
         if (line.length() == 0 || line.startsWith("#"))
         {
-          if (line.toLowerCase().startsWith("##"))
+          if (line.toLowerCase(Locale.ROOT).startsWith("##"))
           {
             processGffPragma(line, gffProps, align, newseqs);
           }
@@ -346,7 +348,7 @@ public class FeaturesFile extends AlignFile implements FeaturesSourceI
     String line;
     while ((line = nextLine()) != null)
     {
-      if (line.toUpperCase().startsWith(ENDFILTERS))
+      if (line.toUpperCase(Locale.ROOT).startsWith(ENDFILTERS))
       {
         return;
       }