X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fio%2FHTMLOutput.java;h=81cdd3c78fcdfe65c72bd83f66e84a24ea776276;hb=3d0101179759ef157b088ea135423cd909512d9f;hp=77006db33573e9bd5b0eecdf62c319dc6fcc8c55;hpb=7c70cb09e9de68ab567e38520d6d09f0c17a3939;p=jalview.git
diff --git a/src/jalview/io/HTMLOutput.java b/src/jalview/io/HTMLOutput.java
index 77006db..81cdd3c 100755
--- a/src/jalview/io/HTMLOutput.java
+++ b/src/jalview/io/HTMLOutput.java
@@ -86,12 +86,12 @@ public abstract class HTMLOutput implements Runnable
};
}
AlignmentExportData exportData = jalview.gui.AlignFrame
- .getAlignmentForExport(FileFormat.Json,
- ap.getAlignViewport(), exportSettings);
+ .getAlignmentForExport(FileFormat.Json, ap.getAlignViewport(),
+ exportSettings);
String bioJSON = new FormatAdapter(ap, exportData.getSettings())
.formatSequences(FileFormat.Json, exportData.getAlignment(),
- exportData.getOmitHidden(), exportData
-.getStartEndPostions(), ap.getAlignViewport()
+ exportData.getOmitHidden(),
+ exportData.getStartEndPostions(), ap.getAlignViewport()
.getAlignment().getHiddenColumns());
return bioJSON;
}
@@ -124,7 +124,7 @@ public abstract class HTMLOutput implements Runnable
{
sb.append(line).append(lineSeparator);
}
-
+
} catch (Exception ex)
{
ex.printStackTrace();
@@ -134,7 +134,7 @@ public abstract class HTMLOutput implements Runnable
{
isReader.close();
}
-
+
if (buffReader != null)
{
buffReader.close();
@@ -146,89 +146,55 @@ public abstract class HTMLOutput implements Runnable
public static String getImageMapHTML()
{
- return new String(
- "\n"
- + "\n"
- + "\n"
- + "\n"
- + "\n"
- + "\n"
- + "\n");
+ return new String("\n" + "\n"
+ + "\n" + "\n" + "\n"
+ + "\n"
+ + "\n");
}
@@ -246,15 +212,15 @@ public abstract class HTMLOutput implements Runnable
"HTML files");
jvFileChooser.setFileView(new JalviewFileView());
- jvFileChooser.setDialogTitle(MessageManager
- .getString("label.save_as_html"));
+ jvFileChooser
+ .setDialogTitle(MessageManager.getString("label.save_as_html"));
jvFileChooser.setToolTipText(MessageManager.getString("action.save"));
int fileChooserOpt = jvFileChooser.showSaveDialog(null);
if (fileChooserOpt == JalviewFileChooser.APPROVE_OPTION)
{
- jalview.bin.Cache.setProperty("LAST_DIRECTORY", jvFileChooser
- .getSelectedFile().getParent());
+ jalview.bin.Cache.setProperty("LAST_DIRECTORY",
+ jvFileChooser.getSelectedFile().getParent());
selectedFile = jvFileChooser.getSelectedFile().getPath();
}
else