X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fio%2FPileUpfile.java;h=728d1c6f2ba67d772db86abf71c83f652760d1d2;hb=b8d09897dacc7b0ad203982b4578e2c1d8929142;hp=c200c5e8105b77df29fde1237968b5fd0a037e7f;hpb=13b2b876b5bc46693d881b4551842279158311f5;p=jalview.git

diff --git a/src/jalview/io/PileUpfile.java b/src/jalview/io/PileUpfile.java
index c200c5e..728d1c6 100755
--- a/src/jalview/io/PileUpfile.java
+++ b/src/jalview/io/PileUpfile.java
@@ -131,7 +131,7 @@ public class PileUpfile
         String seq = seqhash.get(head).toString();
 
         int start = 1;
-        int end = seq.length();
+        int end = -1;
 
         if (maxLength < head.length())
         {