X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fio%2FStockholmFile.java;fp=src%2Fjalview%2Fio%2FStockholmFile.java;h=5d645cafe30874f85fe0b58a06619da2571c91c8;hb=3459a8a691cb22508d7067f240b7254e588e77d3;hp=cff328b040d35d7cb99db90779b53cc1c3c30928;hpb=5b27f1062b2203c4c31702e205f4c78e1992063e;p=jalview.git

diff --git a/src/jalview/io/StockholmFile.java b/src/jalview/io/StockholmFile.java
index cff328b..5d645ca 100644
--- a/src/jalview/io/StockholmFile.java
+++ b/src/jalview/io/StockholmFile.java
@@ -90,7 +90,7 @@ public class StockholmFile extends AlignFile
   // use the following regex to decide an annotations (whole) line is NOT an RNA
   // SS (it contains only E,H,e,h and other non-brace/non-alpha chars)
   private static final Regex NOT_RNASS = new Regex(
-          "^[^<>[\\](){}A-DF-Za-df-z]*$");
+          "^[^<>[\\](){}ADFJ-RUVWYZadfj-ruvwyz]*$");
 
   StringBuffer out; // output buffer