X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fio%2FStockholmFile.java;h=1625241b4b3eb26527edb5483feb6e482d673605;hb=e04b7f7604a0a8a9393e2ddd4c0ba59a9534d821;hp=b407463480ad135d3435552b0f765ae8b3a78c92;hpb=d46053ba40ebbaf5a8b8867cdc770673228b4721;p=jalview.git

diff --git a/src/jalview/io/StockholmFile.java b/src/jalview/io/StockholmFile.java
index b407463..1625241 100644
--- a/src/jalview/io/StockholmFile.java
+++ b/src/jalview/io/StockholmFile.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
@@ -363,8 +363,8 @@ public class StockholmFile extends AlignFile
           if (x.search(annContent))
           {
             // parse out and create alignment annotation directly.
-            parseAnnotationRow(annotations, x.stringMatched(1), x
-                    .stringMatched(2));
+            parseAnnotationRow(annotations, x.stringMatched(1),
+                    x.stringMatched(2));
           }
         }
         else if (annType.equals("GR"))
@@ -447,7 +447,7 @@ public class StockholmFile extends AlignFile
               ns = "";
             }
             ns += seq;
-            content.put(description, seq);
+            content.put(description, ns);
           }
           else
           {