X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fio%2FStockholmFile.java;h=798a77eb524fa05b7cc3215b11625bbbbd34a3b8;hb=c4b90e7ff57436d6bb96d316eed24c887b241f4d;hp=936d2b9e2fbc11ca61aad9a9f7047ba80fe197b8;hpb=df2bf54c7050c42db156e96e73bbabce63e718d7;p=jalview.git

diff --git a/src/jalview/io/StockholmFile.java b/src/jalview/io/StockholmFile.java
index 936d2b9..798a77e 100644
--- a/src/jalview/io/StockholmFile.java
+++ b/src/jalview/io/StockholmFile.java
@@ -930,10 +930,7 @@ public class StockholmFile extends AlignFile
     while ((in < s.length) && (s[in] != null))
     {
       String tmp = printId(s[in], jvSuffix);
-      if (s[in].getSequence().length > max)
-      {
-        max = s[in].getSequence().length;
-      }
+      max = Math.max(max, s[in].getLength());
 
       if (tmp.length() > maxid)
       {