X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fio%2Fgff%2FInterProScanHelper.java;h=91f001822d13b379b0ac503128ea526c5281959d;hb=e134764b7eec841cb56a417250f2dd898680f985;hp=0aa3b74cb2376333ff75f8094f6c5ad91b1c7c34;hpb=136c0793b90b72b928c4d77dc109dd5c644e00d3;p=jalview.git
diff --git a/src/jalview/io/gff/InterProScanHelper.java b/src/jalview/io/gff/InterProScanHelper.java
index 0aa3b74..91f0018 100644
--- a/src/jalview/io/gff/InterProScanHelper.java
+++ b/src/jalview/io/gff/InterProScanHelper.java
@@ -75,7 +75,8 @@ public class InterProScanHelper extends Gff3Helper
/**
* An override that
*
- * - uses Source (column 2) as feature type instead of the default column 3
+ * - uses Source (column 2) as feature type instead of the default column
+ * 3
* - sets "InterProScan" as the feature group
* - extracts "signature_desc" attribute as the feature description
*
@@ -111,8 +112,8 @@ public class InterProScanHelper extends Gff3Helper
SequenceOntologyI so = SequenceOntologyFactory.getInstance();
String type = columns[TYPE_COL];
if (so.isA(type, SequenceOntologyI.PROTEIN_MATCH)
- || (".".equals(columns[SOURCE_COL]) && so.isA(type,
- SequenceOntologyI.POLYPEPTIDE)))
+ || (".".equals(columns[SOURCE_COL])
+ && so.isA(type, SequenceOntologyI.POLYPEPTIDE)))
{
return true;
}
@@ -124,7 +125,8 @@ public class InterProScanHelper extends Gff3Helper
* GFF field 'ID' rather than the usual 'Target' :-O
*/
@Override
- protected String findTargetId(String target, Map> set)
+ protected String findTargetId(String target,
+ Map> set)
{
List ids = set.get(ID);
if (ids == null || ids.size() != 1)