X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fio%2Fgff%2FInterProScanHelper.java;h=c05593f5a2b6a9951dca3c81e509d4b513a01d65;hb=937444414f2ff7d48f6ea8505144c2695d495e8c;hp=68d5d4f41c50931275b1053c5f415f851a308002;hpb=3cccac4697c371b1964236e17b532fd3d180e1c4;p=jalview.git

diff --git a/src/jalview/io/gff/InterProScanHelper.java b/src/jalview/io/gff/InterProScanHelper.java
index 68d5d4f..c05593f 100644
--- a/src/jalview/io/gff/InterProScanHelper.java
+++ b/src/jalview/io/gff/InterProScanHelper.java
@@ -1,3 +1,23 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.io.gff;
 
 import jalview.datamodel.AlignmentI;
@@ -53,8 +73,8 @@ public class InterProScanHelper extends Gff3Helper
   }
 
   /**
- * 
- */
+  * 
+  */
   @Override
   protected SequenceFeature buildSequenceFeature(String[] gff,
           Map<String, List<String>> attributes)
@@ -92,8 +112,8 @@ public class InterProScanHelper extends Gff3Helper
     SequenceOntologyI so = SequenceOntologyFactory.getInstance();
     String type = columns[TYPE_COL];
     if (so.isA(type, SequenceOntologyI.PROTEIN_MATCH)
-            || (".".equals(columns[SOURCE_COL]) && so.isA(type,
-                    SequenceOntologyI.POLYPEPTIDE)))
+            || (".".equals(columns[SOURCE_COL])
+                    && so.isA(type, SequenceOntologyI.POLYPEPTIDE)))
     {
       return true;
     }
@@ -105,7 +125,8 @@ public class InterProScanHelper extends Gff3Helper
    * GFF field 'ID' rather than the usual 'Target' :-O
    */
   @Override
-  protected String findTargetId(String target, Map<String, List<String>> set)
+  protected String findTargetId(String target,
+          Map<String, List<String>> set)
   {
     List<String> ids = set.get(ID);
     if (ids == null || ids.size() != 1)