X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fio%2Fgff%2FSequenceOntologyFactory.java;h=90cae7abb2b9d0f1cff8bf7dc81e8616a35a0df8;hb=10b40b4ec840e5076c95109b0ea518928385821c;hp=acf90e7facdbc73a67b748f22f84cf8c94e872a7;hpb=b4d15601e50bafd396bce2af9dded397e63cc8b8;p=jalview.git
diff --git a/src/jalview/io/gff/SequenceOntologyFactory.java b/src/jalview/io/gff/SequenceOntologyFactory.java
index acf90e7..90cae7a 100644
--- a/src/jalview/io/gff/SequenceOntologyFactory.java
+++ b/src/jalview/io/gff/SequenceOntologyFactory.java
@@ -1,14 +1,29 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.io.gff;
-import jalview.bin.Cache;
-import jalview.ext.so.SequenceOntology;
-
/**
- * A factory class that returns a model of the Sequence Ontology. If the user's
- * Jalview properties file has the line
- * USE_SO_LITE = true
- * then a hard-coded subset will be used, otherwise the full ontology (as
- * downloaded at a point in time).
+ * A factory class that returns a model of the Sequence Ontology. By default a
+ * hard-coded subset is used (for the applet, or testing), or setInstance() can
+ * be used to set full Ontology data.
*
* @author gmcarstairs
*
@@ -21,14 +36,7 @@ public class SequenceOntologyFactory
{
if (instance == null)
{
- if (Cache.getDefault("USE_SO_LITE", false))
- {
- instance = new SequenceOntologyLite();
- }
- else
- {
- instance = new SequenceOntology();
- }
+ instance = new SequenceOntologyLite();
}
return instance;
}