X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fio%2Fvamsas%2FTree.java;h=9b76f917819607191d486c8ccdeaa92d19594429;hb=37b210ecad3c132b87c525f84e3b754a4edf12a6;hp=0545839e1deb9d39608e38901860f174f5ddfb72;hpb=d423f22792e47dbc800ae220a58677f988971d06;p=jalview.git

diff --git a/src/jalview/io/vamsas/Tree.java b/src/jalview/io/vamsas/Tree.java
index 0545839..9b76f91 100644
--- a/src/jalview/io/vamsas/Tree.java
+++ b/src/jalview/io/vamsas/Tree.java
@@ -1,5 +1,5 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
  * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
@@ -155,8 +155,7 @@ public class Tree extends DatastoreItem
     else
     {
       // handle conflict
-      log
-              .info("TODO: Add the locally modified tree in Jalview as a new tree in document, leaving locked tree unchanged.");
+      log.info("TODO: Add the locally modified tree in Jalview as a new tree in document, leaving locked tree unchanged.");
     }
   }
 
@@ -220,8 +219,8 @@ public class Tree extends DatastoreItem
       // or just correctly resolve the tree's seqData to the correct alignment
       // in
       // the document.
-      Vector alsqrefs = getjv2vObjs(findAlignmentSequences(jal, tp
-              .getTree().seqData.getSequences()));
+      Vector alsqrefs = getjv2vObjs(findAlignmentSequences(jal,
+              tp.getTree().seqData.getSequences()));
       Object[] alsqs = new Object[alsqrefs.size()];
       alsqrefs.copyInto(alsqs);
       vInput.setObjRef(alsqs);
@@ -347,9 +346,7 @@ public class Tree extends DatastoreItem
         else
         {
           leaf.setPlaceholder(true);
-          leaf
-                  .setElement(new Sequence(leaf.getName(),
-                          "THISISAPLACEHLDER"));
+          leaf.setElement(new Sequence(leaf.getName(), "THISISAPLACEHLDER"));
         }
       }
     }