X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fjbgui%2FGAlignFrame.java;h=205b9c691304d4f1034f233c43e891c206225561;hb=6fb341da6a316869ba5fc87c146c30d1279f06fa;hp=e62993287826ab73b98f08ac9e1998a8bff1b08e;hpb=9359a2279fcaa47910e31805b967390bffd6a573;p=jalview.git

diff --git a/src/jalview/jbgui/GAlignFrame.java b/src/jalview/jbgui/GAlignFrame.java
index e629932..205b9c6 100755
--- a/src/jalview/jbgui/GAlignFrame.java
+++ b/src/jalview/jbgui/GAlignFrame.java
@@ -173,6 +173,10 @@ public class GAlignFrame extends JInternalFrame
 
   protected JMenuItem showTranslation = new JMenuItem();
 
+  protected JMenuItem showReverse = new JMenuItem();
+
+  protected JMenuItem showReverseComplement = new JMenuItem();
+
   protected JMenu showProducts = new JMenu();
 
   protected JMenuItem rnahelicesColour = new JMenuItem();
@@ -1686,6 +1690,25 @@ public class GAlignFrame extends JInternalFrame
         showTranslation_actionPerformed(e);
       }
     });
+    showReverse.setText(MessageManager.getString("label.reverse"));
+    showReverse.addActionListener(new ActionListener()
+    {
+      @Override
+      public void actionPerformed(ActionEvent e)
+      {
+        showReverse_actionPerformed(false);
+      }
+    });
+    showReverseComplement.setText(MessageManager
+            .getString("label.reverse_complement"));
+    showReverseComplement.addActionListener(new ActionListener()
+    {
+      @Override
+      public void actionPerformed(ActionEvent e)
+      {
+        showReverse_actionPerformed(true);
+      }
+    });
 
     JMenuItem extractScores = new JMenuItem(
             MessageManager.getString("label.extract_scores"));
@@ -2252,6 +2275,8 @@ public class GAlignFrame extends JInternalFrame
     calculateMenu.add(PCAMenuItem);
     calculateMenu.addSeparator();
     calculateMenu.add(showTranslation);
+    calculateMenu.add(showReverse);
+    calculateMenu.add(showReverseComplement);
     calculateMenu.add(showProducts);
     calculateMenu.add(autoCalculate);
     calculateMenu.add(sortByTree);
@@ -2320,6 +2345,16 @@ public class GAlignFrame extends JInternalFrame
   }
 
   /**
+   * Generate the reverse sequence (or reverse complement if the flag is true)
+   * and add it to the alignment
+   * 
+   * @param complement
+   */
+  protected void showReverse_actionPerformed(boolean complement)
+  {
+  }
+
+  /**
    * Adds the given action listener and key accelerator to the given menu item.
    * Also saves in a lookup table to support lookup of action by key stroke.
    * 
@@ -3107,12 +3142,7 @@ public class GAlignFrame extends JInternalFrame
     return this.splitFrame;
   }
 
-  protected void showComplement_actionPerformed(boolean state)
-  {
-  }
-
-  public JRadioButtonMenuItem getTcoffeColour()
+  protected void showComplement_actionPerformed(boolean complement)
   {
-    return tcoffeeColour;
   }
 }