X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fjbgui%2FGFinder.java;h=ed03a80655342b01ff8e5cb2280ee8e83690e23b;hb=1e5e507fe9402197a0e925ca71550bae0ab14c72;hp=32d2f24683c90ca83b6c1cba11133c1e54c3805e;hpb=f18cbb26b5cd3d800b4d0317e544ae4e4075a4c3;p=jalview.git

diff --git a/src/jalview/jbgui/GFinder.java b/src/jalview/jbgui/GFinder.java
index 32d2f24..ed03a80 100755
--- a/src/jalview/jbgui/GFinder.java
+++ b/src/jalview/jbgui/GFinder.java
@@ -22,6 +22,8 @@ import java.awt.*;
 import java.awt.event.*;
 import javax.swing.*;
 import javax.swing.event.*;
+import jalview.io.FormatAdapter;
+import jalview.datamodel.SequenceI;
 
 public class GFinder
     extends JPanel
@@ -155,17 +157,21 @@ public class GFinder
 
   public void textfield_caretUpdate(CaretEvent e)
   {
-    if (textfield.getText().indexOf("\t") > -1)
+    if (textfield.getText().indexOf(">") > -1)
     {
       SwingUtilities.invokeLater(new Runnable()
       {
         public void run()
         {
-          String text = textfield.getText();
-          text = text.substring(text.lastIndexOf("\t") + 1).trim();
-          text = jalview.analysis.AlignSeq.extractGaps(
-              jalview.util.Comparison.GapChars, text);
-          textfield.setText(text);
+          String str = textfield.getText();
+          SequenceI[] sequences = new FormatAdapter().readFile(str, "Paste", "FASTA");
+          if(sequences!=null && sequences.length>0)
+          {
+            str = jalview.analysis.AlignSeq.extractGaps(
+                jalview.util.Comparison.GapChars, sequences[0].getSequence());
+
+            textfield.setText(str);
+          }
         }
       });
     }