X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Frenderer%2FResidueShaderI.java;h=7e67598448972128269dac69e764d4ef368ac44e;hb=6c7cac79652fa6c7050311f73f36b9a9d05e6a6b;hp=d0b25b673cec3425016c61056ae3228aa2a82282;hpb=cef7be0f9008ff15318e3479a5de35e127071ef3;p=jalview.git

diff --git a/src/jalview/renderer/ResidueShaderI.java b/src/jalview/renderer/ResidueShaderI.java
index d0b25b6..7e67598 100644
--- a/src/jalview/renderer/ResidueShaderI.java
+++ b/src/jalview/renderer/ResidueShaderI.java
@@ -5,16 +5,16 @@
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License 
+ * modify it under the terms of the GNU General License 
  * as published by the Free Software Foundation, either version 3
  * of the License, or (at your option) any later version.
  *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
- * PURPOSE.  See the GNU General Public License for more details.
+ * PURPOSE.  See the GNU General License for more details.
  * 
- * You should have received a copy of the GNU General Public License
+ * You should have received a copy of the GNU General License
  * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
@@ -32,18 +32,15 @@ import java.util.Map;
 
 public interface ResidueShaderI
 {
+  void setConsensus(ProfilesI cons);
 
-  public abstract void setConsensus(ProfilesI cons);
+  boolean conservationApplied();
 
-  public abstract void setInformation(ProfilesI info);
+  void setConservationApplied(boolean conservationApplied);
 
-  public abstract boolean conservationApplied();
+  void setConservation(Conservation cons);
 
-  public abstract void setConservationApplied(boolean conservationApplied);
-
-  public abstract void setConservation(Conservation cons);
-
-  public abstract void alignmentChanged(AnnotatedCollectionI alignment,
+  void alignmentChanged(AnnotatedCollectionI alignment,
           Map<SequenceI, SequenceCollectionI> hiddenReps);
 
   /**
@@ -53,19 +50,19 @@ public interface ResidueShaderI
    * @param consensusThreshold
    * @param ignoreGaps
    */
-  public abstract void setThreshold(int consensusThreshold,
+  void setThreshold(int consensusThreshold,
           boolean ignoreGaps);
 
-  public abstract void setConservationInc(int i);
+  void setConservationInc(int i);
 
-  public abstract int getConservationInc();
+  int getConservationInc();
 
   /**
    * Get the percentage threshold for this colour scheme
    * 
    * @return Returns the percentage threshold
    */
-  public abstract int getThreshold();
+  int getThreshold();
 
   /**
    * Returns the possibly context dependent colour for the given symbol at the
@@ -77,11 +74,11 @@ public interface ResidueShaderI
    * @param seq
    * @return
    */
-  public abstract Color findColour(char symbol, int position,
+  Color findColour(char symbol, int position,
           SequenceI seq);
 
-  public abstract ColourSchemeI getColourScheme();
+  ColourSchemeI getColourScheme();
 
-  public abstract void setColourScheme(ColourSchemeI cs);
+  void setColourScheme(ColourSchemeI cs);
 
 }
\ No newline at end of file