X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fschemabinding%2Fversion2%2FDBRef.java;h=bedb40734240d6a03bdc931073c1eacd91841482;hb=7243db3d99cc1760c2d4802f3005b4f86d1b4bd6;hp=576a4ad5ff391531f0459ce5bb6fc82b1d19505a;hpb=374d49bb6bd6bb285f7e49560e2bcb8004ff4af3;p=jalview.git
diff --git a/src/jalview/schemabinding/version2/DBRef.java b/src/jalview/schemabinding/version2/DBRef.java
index 576a4ad..bedb407 100644
--- a/src/jalview/schemabinding/version2/DBRef.java
+++ b/src/jalview/schemabinding/version2/DBRef.java
@@ -1,199 +1,236 @@
-/*
- * This class was automatically generated with
- * Castor 0.9.6, using an XML
- * Schema.
- * $Id$
- */
-
-package jalview.schemabinding.version2;
-
- //---------------------------------/
- //- Imported classes and packages -/
-//---------------------------------/
-
-import java.io.IOException;
-import java.io.Reader;
-import java.io.Serializable;
-import java.io.Writer;
-import org.exolab.castor.xml.MarshalException;
-import org.exolab.castor.xml.Marshaller;
-import org.exolab.castor.xml.Unmarshaller;
-import org.exolab.castor.xml.ValidationException;
-import org.xml.sax.ContentHandler;
-
-/**
- * Class DBRef.
- *
- * @version $Revision$ $Date$
- */
-public class DBRef implements java.io.Serializable {
-
-
- //--------------------------/
- //- Class/Member Variables -/
- //--------------------------/
-
- /**
- * Field _source
- */
- private java.lang.String _source;
-
- /**
- * Field _version
- */
- private java.lang.String _version;
-
- /**
- * Field _accessionId
- */
- private java.lang.String _accessionId;
-
-
- //----------------/
- //- Constructors -/
- //----------------/
-
- public DBRef() {
- super();
- } //-- jalview.schemabinding.version2.DBRef()
-
-
- //-----------/
- //- Methods -/
- //-----------/
-
- /**
- * Returns the value of field 'accessionId'.
- *
- * @return String
- * @return the value of field 'accessionId'.
- */
- public java.lang.String getAccessionId()
- {
- return this._accessionId;
- } //-- java.lang.String getAccessionId()
-
- /**
- * Returns the value of field 'source'.
- *
- * @return String
- * @return the value of field 'source'.
- */
- public java.lang.String getSource()
- {
- return this._source;
- } //-- java.lang.String getSource()
-
- /**
- * Returns the value of field 'version'.
- *
- * @return String
- * @return the value of field 'version'.
- */
- public java.lang.String getVersion()
- {
- return this._version;
- } //-- java.lang.String getVersion()
-
- /**
- * Method isValid
- *
- *
- *
- * @return boolean
- */
- public boolean isValid()
- {
- try {
- validate();
- }
- catch (org.exolab.castor.xml.ValidationException vex) {
- return false;
- }
- return true;
- } //-- boolean isValid()
-
- /**
- * Method marshal
- *
- *
- *
- * @param out
- */
- public void marshal(java.io.Writer out)
- throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
- {
-
- Marshaller.marshal(this, out);
- } //-- void marshal(java.io.Writer)
-
- /**
- * Method marshal
- *
- *
- *
- * @param handler
- */
- public void marshal(org.xml.sax.ContentHandler handler)
- throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
- {
-
- Marshaller.marshal(this, handler);
- } //-- void marshal(org.xml.sax.ContentHandler)
-
- /**
- * Sets the value of field 'accessionId'.
- *
- * @param accessionId the value of field 'accessionId'.
- */
- public void setAccessionId(java.lang.String accessionId)
- {
- this._accessionId = accessionId;
- } //-- void setAccessionId(java.lang.String)
-
- /**
- * Sets the value of field 'source'.
- *
- * @param source the value of field 'source'.
- */
- public void setSource(java.lang.String source)
- {
- this._source = source;
- } //-- void setSource(java.lang.String)
-
- /**
- * Sets the value of field 'version'.
- *
- * @param version the value of field 'version'.
- */
- public void setVersion(java.lang.String version)
- {
- this._version = version;
- } //-- void setVersion(java.lang.String)
-
- /**
- * Method unmarshal
- *
- *
- *
- * @param reader
- * @return Object
- */
- public static java.lang.Object unmarshal(java.io.Reader reader)
- throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
- {
- return (jalview.schemabinding.version2.DBRef) Unmarshaller.unmarshal(jalview.schemabinding.version2.DBRef.class, reader);
- } //-- java.lang.Object unmarshal(java.io.Reader)
-
- /**
- * Method validate
- *
- */
- public void validate()
- throws org.exolab.castor.xml.ValidationException
- {
- org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
- validator.validate(this);
- } //-- void validate()
-
-}
+/*******************************************************************************
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
+ *******************************************************************************/
+/*
+ * This class was automatically generated with
+ * Castor 1.1, using an XML
+ * Schema.
+ * $Id$
+ */
+
+package jalview.schemabinding.version2;
+
+ //---------------------------------/
+ //- Imported classes and packages -/
+//---------------------------------/
+
+import org.exolab.castor.xml.Marshaller;
+import org.exolab.castor.xml.Unmarshaller;
+
+/**
+ * Class DBRef.
+ *
+ * @version $Revision$ $Date$
+ */
+public class DBRef implements java.io.Serializable {
+
+
+ //--------------------------/
+ //- Class/Member Variables -/
+ //--------------------------/
+
+ /**
+ * Field _source.
+ */
+ private java.lang.String _source;
+
+ /**
+ * Field _version.
+ */
+ private java.lang.String _version;
+
+ /**
+ * Field _accessionId.
+ */
+ private java.lang.String _accessionId;
+
+ /**
+ * Field _mapping.
+ */
+ private jalview.schemabinding.version2.Mapping _mapping;
+
+
+ //----------------/
+ //- Constructors -/
+ //----------------/
+
+ public DBRef() {
+ super();
+ }
+
+
+ //-----------/
+ //- Methods -/
+ //-----------/
+
+ /**
+ * Returns the value of field 'accessionId'.
+ *
+ * @return the value of field 'AccessionId'.
+ */
+ public java.lang.String getAccessionId(
+ ) {
+ return this._accessionId;
+ }
+
+ /**
+ * Returns the value of field 'mapping'.
+ *
+ * @return the value of field 'Mapping'.
+ */
+ public jalview.schemabinding.version2.Mapping getMapping(
+ ) {
+ return this._mapping;
+ }
+
+ /**
+ * Returns the value of field 'source'.
+ *
+ * @return the value of field 'Source'.
+ */
+ public java.lang.String getSource(
+ ) {
+ return this._source;
+ }
+
+ /**
+ * Returns the value of field 'version'.
+ *
+ * @return the value of field 'Version'.
+ */
+ public java.lang.String getVersion(
+ ) {
+ return this._version;
+ }
+
+ /**
+ * Method isValid.
+ *
+ * @return true if this object is valid according to the schema
+ */
+ public boolean isValid(
+ ) {
+ try {
+ validate();
+ } catch (org.exolab.castor.xml.ValidationException vex) {
+ return false;
+ }
+ return true;
+ }
+
+ /**
+ *
+ *
+ * @param out
+ * @throws org.exolab.castor.xml.MarshalException if object is
+ * null or if any SAXException is thrown during marshaling
+ * @throws org.exolab.castor.xml.ValidationException if this
+ * object is an invalid instance according to the schema
+ */
+ public void marshal(
+ final java.io.Writer out)
+ throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
+ Marshaller.marshal(this, out);
+ }
+
+ /**
+ *
+ *
+ * @param handler
+ * @throws java.io.IOException if an IOException occurs during
+ * marshaling
+ * @throws org.exolab.castor.xml.ValidationException if this
+ * object is an invalid instance according to the schema
+ * @throws org.exolab.castor.xml.MarshalException if object is
+ * null or if any SAXException is thrown during marshaling
+ */
+ public void marshal(
+ final org.xml.sax.ContentHandler handler)
+ throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
+ Marshaller.marshal(this, handler);
+ }
+
+ /**
+ * Sets the value of field 'accessionId'.
+ *
+ * @param accessionId the value of field 'accessionId'.
+ */
+ public void setAccessionId(
+ final java.lang.String accessionId) {
+ this._accessionId = accessionId;
+ }
+
+ /**
+ * Sets the value of field 'mapping'.
+ *
+ * @param mapping the value of field 'mapping'.
+ */
+ public void setMapping(
+ final jalview.schemabinding.version2.Mapping mapping) {
+ this._mapping = mapping;
+ }
+
+ /**
+ * Sets the value of field 'source'.
+ *
+ * @param source the value of field 'source'.
+ */
+ public void setSource(
+ final java.lang.String source) {
+ this._source = source;
+ }
+
+ /**
+ * Sets the value of field 'version'.
+ *
+ * @param version the value of field 'version'.
+ */
+ public void setVersion(
+ final java.lang.String version) {
+ this._version = version;
+ }
+
+ /**
+ * Method unmarshal.
+ *
+ * @param reader
+ * @throws org.exolab.castor.xml.MarshalException if object is
+ * null or if any SAXException is thrown during marshaling
+ * @throws org.exolab.castor.xml.ValidationException if this
+ * object is an invalid instance according to the schema
+ * @return the unmarshaled jalview.schemabinding.version2.DBRef
+ */
+ public static jalview.schemabinding.version2.DBRef unmarshal(
+ final java.io.Reader reader)
+ throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
+ return (jalview.schemabinding.version2.DBRef) Unmarshaller.unmarshal(jalview.schemabinding.version2.DBRef.class, reader);
+ }
+
+ /**
+ *
+ *
+ * @throws org.exolab.castor.xml.ValidationException if this
+ * object is an invalid instance according to the schema
+ */
+ public void validate(
+ )
+ throws org.exolab.castor.xml.ValidationException {
+ org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
+ validator.validate(this);
+ }
+
+}