X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fschemabinding%2Fversion2%2FFeatureSettings.java;h=fa75e76ee0210d2ee1b7d75bfbab6815f04201bb;hb=2470d1b4ccaab07f510516d72bee6067fbab3e33;hp=19c567c1809ef8cded4b1e6692755c0308d86c41;hpb=9adf6bc4eac154c1f96a2be5867ce24d7c6470f1;p=jalview.git diff --git a/src/jalview/schemabinding/version2/FeatureSettings.java b/src/jalview/schemabinding/version2/FeatureSettings.java index 19c567c..fa75e76 100644 --- a/src/jalview/schemabinding/version2/FeatureSettings.java +++ b/src/jalview/schemabinding/version2/FeatureSettings.java @@ -7,8 +7,8 @@ package jalview.schemabinding.version2; - //---------------------------------/ - //- Imported classes and packages -/ +//---------------------------------/ +//- Imported classes and packages -/ //---------------------------------/ import org.exolab.castor.xml.Marshaller; @@ -19,414 +19,444 @@ import org.exolab.castor.xml.Unmarshaller; * * @version $Revision$ $Date$ */ -public class FeatureSettings implements java.io.Serializable { - - - //--------------------------/ - //- Class/Member Variables -/ - //--------------------------/ - - /** - * Field _settingList. - */ - private java.util.Vector _settingList; - - /** - * Field _groupList. - */ - private java.util.Vector _groupList; - - - //----------------/ - //- Constructors -/ - //----------------/ - - public FeatureSettings() { - super(); - this._settingList = new java.util.Vector(); - this._groupList = new java.util.Vector(); - } - - - //-----------/ - //- Methods -/ - //-----------/ - - /** - * - * - * @param vGroup - * @throws java.lang.IndexOutOfBoundsException if the index - * given is outside the bounds of the collection - */ - public void addGroup( - final jalview.schemabinding.version2.Group vGroup) - throws java.lang.IndexOutOfBoundsException { - this._groupList.addElement(vGroup); - } - - /** - * - * - * @param index - * @param vGroup - * @throws java.lang.IndexOutOfBoundsException if the index - * given is outside the bounds of the collection - */ - public void addGroup( - final int index, - final jalview.schemabinding.version2.Group vGroup) - throws java.lang.IndexOutOfBoundsException { - this._groupList.add(index, vGroup); - } - - /** - * - * - * @param vSetting - * @throws java.lang.IndexOutOfBoundsException if the index - * given is outside the bounds of the collection - */ - public void addSetting( - final jalview.schemabinding.version2.Setting vSetting) - throws java.lang.IndexOutOfBoundsException { - this._settingList.addElement(vSetting); - } - - /** - * - * - * @param index - * @param vSetting - * @throws java.lang.IndexOutOfBoundsException if the index - * given is outside the bounds of the collection - */ - public void addSetting( - final int index, - final jalview.schemabinding.version2.Setting vSetting) - throws java.lang.IndexOutOfBoundsException { - this._settingList.add(index, vSetting); - } - - /** - * Method enumerateGroup. - * - * @return an Enumeration over all - * jalview.schemabinding.version2.Group elements - */ - public java.util.Enumeration enumerateGroup( - ) { - return this._groupList.elements(); - } - - /** - * Method enumerateSetting. - * - * @return an Enumeration over all - * jalview.schemabinding.version2.Setting elements - */ - public java.util.Enumeration enumerateSetting( - ) { - return this._settingList.elements(); - } - - /** - * Method getGroup. - * - * @param index - * @throws java.lang.IndexOutOfBoundsException if the index - * given is outside the bounds of the collection - * @return the value of the - * jalview.schemabinding.version2.Group at the given index - */ - public jalview.schemabinding.version2.Group getGroup( - final int index) - throws java.lang.IndexOutOfBoundsException { - // check bounds for index - if (index < 0 || index >= this._groupList.size()) { - throw new IndexOutOfBoundsException("getGroup: Index value '" + index + "' not in range [0.." + (this._groupList.size() - 1) + "]"); - } - - return (jalview.schemabinding.version2.Group) _groupList.get(index); - } - - /** - * Method getGroup.Returns the contents of the collection in an - * Array.
Note: Just in case the collection contents are - * changing in another thread, we pass a 0-length Array of the - * correct type into the API call. This way we know - * that the Array returned is of exactly the correct length. - * - * @return this collection as an Array - */ - public jalview.schemabinding.version2.Group[] getGroup( - ) { - jalview.schemabinding.version2.Group[] array = new jalview.schemabinding.version2.Group[0]; - return (jalview.schemabinding.version2.Group[]) this._groupList.toArray(array); - } - - /** - * Method getGroupCount. - * - * @return the size of this collection - */ - public int getGroupCount( - ) { - return this._groupList.size(); - } - - /** - * Method getSetting. - * - * @param index - * @throws java.lang.IndexOutOfBoundsException if the index - * given is outside the bounds of the collection - * @return the value of the - * jalview.schemabinding.version2.Setting at the given index - */ - public jalview.schemabinding.version2.Setting getSetting( - final int index) - throws java.lang.IndexOutOfBoundsException { - // check bounds for index - if (index < 0 || index >= this._settingList.size()) { - throw new IndexOutOfBoundsException("getSetting: Index value '" + index + "' not in range [0.." + (this._settingList.size() - 1) + "]"); - } - - return (jalview.schemabinding.version2.Setting) _settingList.get(index); - } - - /** - * Method getSetting.Returns the contents of the collection in - * an Array.
Note: Just in case the collection contents - * are changing in another thread, we pass a 0-length Array of - * the correct type into the API call. This way we know - * that the Array returned is of exactly the correct length. - * - * @return this collection as an Array - */ - public jalview.schemabinding.version2.Setting[] getSetting( - ) { - jalview.schemabinding.version2.Setting[] array = new jalview.schemabinding.version2.Setting[0]; - return (jalview.schemabinding.version2.Setting[]) this._settingList.toArray(array); - } - - /** - * Method getSettingCount. - * - * @return the size of this collection - */ - public int getSettingCount( - ) { - return this._settingList.size(); - } - - /** - * Method isValid. - * - * @return true if this object is valid according to the schema - */ - public boolean isValid( - ) { - try { - validate(); - } catch (org.exolab.castor.xml.ValidationException vex) { - return false; - } - return true; - } - - /** - * - * - * @param out - * @throws org.exolab.castor.xml.MarshalException if object is - * null or if any SAXException is thrown during marshaling - * @throws org.exolab.castor.xml.ValidationException if this - * object is an invalid instance according to the schema - */ - public void marshal( - final java.io.Writer out) - throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { - Marshaller.marshal(this, out); - } - - /** - * - * - * @param handler - * @throws java.io.IOException if an IOException occurs during - * marshaling - * @throws org.exolab.castor.xml.ValidationException if this - * object is an invalid instance according to the schema - * @throws org.exolab.castor.xml.MarshalException if object is - * null or if any SAXException is thrown during marshaling - */ - public void marshal( - final org.xml.sax.ContentHandler handler) - throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { - Marshaller.marshal(this, handler); - } - - /** - */ - public void removeAllGroup( - ) { - this._groupList.clear(); +public class FeatureSettings implements java.io.Serializable +{ + + // --------------------------/ + // - Class/Member Variables -/ + // --------------------------/ + + /** + * Field _settingList. + */ + private java.util.Vector _settingList; + + /** + * Field _groupList. + */ + private java.util.Vector _groupList; + + // ----------------/ + // - Constructors -/ + // ----------------/ + + public FeatureSettings() + { + super(); + this._settingList = new java.util.Vector(); + this._groupList = new java.util.Vector(); + } + + // -----------/ + // - Methods -/ + // -----------/ + + /** + * + * + * @param vGroup + * @throws java.lang.IndexOutOfBoundsException + * if the index given is outside the bounds of the collection + */ + public void addGroup(final jalview.schemabinding.version2.Group vGroup) + throws java.lang.IndexOutOfBoundsException + { + this._groupList.addElement(vGroup); + } + + /** + * + * + * @param index + * @param vGroup + * @throws java.lang.IndexOutOfBoundsException + * if the index given is outside the bounds of the collection + */ + public void addGroup(final int index, + final jalview.schemabinding.version2.Group vGroup) + throws java.lang.IndexOutOfBoundsException + { + this._groupList.add(index, vGroup); + } + + /** + * + * + * @param vSetting + * @throws java.lang.IndexOutOfBoundsException + * if the index given is outside the bounds of the collection + */ + public void addSetting( + final jalview.schemabinding.version2.Setting vSetting) + throws java.lang.IndexOutOfBoundsException + { + this._settingList.addElement(vSetting); + } + + /** + * + * + * @param index + * @param vSetting + * @throws java.lang.IndexOutOfBoundsException + * if the index given is outside the bounds of the collection + */ + public void addSetting(final int index, + final jalview.schemabinding.version2.Setting vSetting) + throws java.lang.IndexOutOfBoundsException + { + this._settingList.add(index, vSetting); + } + + /** + * Method enumerateGroup. + * + * @return an Enumeration over all jalview.schemabinding.version2.Group + * elements + */ + public java.util.Enumeration enumerateGroup() + { + return this._groupList.elements(); + } + + /** + * Method enumerateSetting. + * + * @return an Enumeration over all jalview.schemabinding.version2.Setting + * elements + */ + public java.util.Enumeration enumerateSetting() + { + return this._settingList.elements(); + } + + /** + * Method getGroup. + * + * @param index + * @throws java.lang.IndexOutOfBoundsException + * if the index given is outside the bounds of the collection + * @return the value of the jalview.schemabinding.version2.Group at the given + * index + */ + public jalview.schemabinding.version2.Group getGroup(final int index) + throws java.lang.IndexOutOfBoundsException + { + // check bounds for index + if (index < 0 || index >= this._groupList.size()) + { + throw new IndexOutOfBoundsException("getGroup: Index value '" + index + + "' not in range [0.." + (this._groupList.size() - 1) + "]"); } - /** - */ - public void removeAllSetting( - ) { - this._settingList.clear(); - } - - /** - * Method removeGroup. - * - * @param vGroup - * @return true if the object was removed from the collection. - */ - public boolean removeGroup( - final jalview.schemabinding.version2.Group vGroup) { - boolean removed = _groupList.remove(vGroup); - return removed; - } - - /** - * Method removeGroupAt. - * - * @param index - * @return the element removed from the collection - */ - public jalview.schemabinding.version2.Group removeGroupAt( - final int index) { - java.lang.Object obj = this._groupList.remove(index); - return (jalview.schemabinding.version2.Group) obj; - } - - /** - * Method removeSetting. - * - * @param vSetting - * @return true if the object was removed from the collection. - */ - public boolean removeSetting( - final jalview.schemabinding.version2.Setting vSetting) { - boolean removed = _settingList.remove(vSetting); - return removed; + return (jalview.schemabinding.version2.Group) _groupList.get(index); + } + + /** + * Method getGroup.Returns the contents of the collection in an Array. + *
+ * Note: Just in case the collection contents are changing in another thread, + * we pass a 0-length Array of the correct type into the API call. This way we + * know that the Array returned is of exactly the correct length. + * + * @return this collection as an Array + */ + public jalview.schemabinding.version2.Group[] getGroup() + { + jalview.schemabinding.version2.Group[] array = new jalview.schemabinding.version2.Group[0]; + return (jalview.schemabinding.version2.Group[]) this._groupList + .toArray(array); + } + + /** + * Method getGroupCount. + * + * @return the size of this collection + */ + public int getGroupCount() + { + return this._groupList.size(); + } + + /** + * Method getSetting. + * + * @param index + * @throws java.lang.IndexOutOfBoundsException + * if the index given is outside the bounds of the collection + * @return the value of the jalview.schemabinding.version2.Setting at the + * given index + */ + public jalview.schemabinding.version2.Setting getSetting(final int index) + throws java.lang.IndexOutOfBoundsException + { + // check bounds for index + if (index < 0 || index >= this._settingList.size()) + { + throw new IndexOutOfBoundsException("getSetting: Index value '" + + index + "' not in range [0.." + + (this._settingList.size() - 1) + "]"); } - /** - * Method removeSettingAt. - * - * @param index - * @return the element removed from the collection - */ - public jalview.schemabinding.version2.Setting removeSettingAt( - final int index) { - java.lang.Object obj = this._settingList.remove(index); - return (jalview.schemabinding.version2.Setting) obj; + return (jalview.schemabinding.version2.Setting) _settingList.get(index); + } + + /** + * Method getSetting.Returns the contents of the collection in an Array. + *
+ * Note: Just in case the collection contents are changing in another thread, + * we pass a 0-length Array of the correct type into the API call. This way we + * know that the Array returned is of exactly the correct length. + * + * @return this collection as an Array + */ + public jalview.schemabinding.version2.Setting[] getSetting() + { + jalview.schemabinding.version2.Setting[] array = new jalview.schemabinding.version2.Setting[0]; + return (jalview.schemabinding.version2.Setting[]) this._settingList + .toArray(array); + } + + /** + * Method getSettingCount. + * + * @return the size of this collection + */ + public int getSettingCount() + { + return this._settingList.size(); + } + + /** + * Method isValid. + * + * @return true if this object is valid according to the schema + */ + public boolean isValid() + { + try + { + validate(); + } catch (org.exolab.castor.xml.ValidationException vex) + { + return false; } - - /** - * - * - * @param index - * @param vGroup - * @throws java.lang.IndexOutOfBoundsException if the index - * given is outside the bounds of the collection - */ - public void setGroup( - final int index, - final jalview.schemabinding.version2.Group vGroup) - throws java.lang.IndexOutOfBoundsException { - // check bounds for index - if (index < 0 || index >= this._groupList.size()) { - throw new IndexOutOfBoundsException("setGroup: Index value '" + index + "' not in range [0.." + (this._groupList.size() - 1) + "]"); - } - - this._groupList.set(index, vGroup); - } - - /** - * - * - * @param vGroupArray + return true; + } + + /** + * + * + * @param out + * @throws org.exolab.castor.xml.MarshalException + * if object is null or if any SAXException is thrown during + * marshaling + * @throws org.exolab.castor.xml.ValidationException + * if this object is an invalid instance according to the schema + */ + public void marshal(final java.io.Writer out) + throws org.exolab.castor.xml.MarshalException, + org.exolab.castor.xml.ValidationException + { + Marshaller.marshal(this, out); + } + + /** + * + * + * @param handler + * @throws java.io.IOException + * if an IOException occurs during marshaling + * @throws org.exolab.castor.xml.ValidationException + * if this object is an invalid instance according to the schema + * @throws org.exolab.castor.xml.MarshalException + * if object is null or if any SAXException is thrown during + * marshaling + */ + public void marshal(final org.xml.sax.ContentHandler handler) + throws java.io.IOException, + org.exolab.castor.xml.MarshalException, + org.exolab.castor.xml.ValidationException + { + Marshaller.marshal(this, handler); + } + + /** */ - public void setGroup( - final jalview.schemabinding.version2.Group[] vGroupArray) { - //-- copy array - _groupList.clear(); - - for (int i = 0; i < vGroupArray.length; i++) { - this._groupList.add(vGroupArray[i]); - } - } + public void removeAllGroup() + { + this._groupList.clear(); + } - /** - * - * - * @param index - * @param vSetting - * @throws java.lang.IndexOutOfBoundsException if the index - * given is outside the bounds of the collection + /** */ - public void setSetting( - final int index, - final jalview.schemabinding.version2.Setting vSetting) - throws java.lang.IndexOutOfBoundsException { - // check bounds for index - if (index < 0 || index >= this._settingList.size()) { - throw new IndexOutOfBoundsException("setSetting: Index value '" + index + "' not in range [0.." + (this._settingList.size() - 1) + "]"); - } - - this._settingList.set(index, vSetting); + public void removeAllSetting() + { + this._settingList.clear(); + } + + /** + * Method removeGroup. + * + * @param vGroup + * @return true if the object was removed from the collection. + */ + public boolean removeGroup( + final jalview.schemabinding.version2.Group vGroup) + { + boolean removed = _groupList.remove(vGroup); + return removed; + } + + /** + * Method removeGroupAt. + * + * @param index + * @return the element removed from the collection + */ + public jalview.schemabinding.version2.Group removeGroupAt(final int index) + { + java.lang.Object obj = this._groupList.remove(index); + return (jalview.schemabinding.version2.Group) obj; + } + + /** + * Method removeSetting. + * + * @param vSetting + * @return true if the object was removed from the collection. + */ + public boolean removeSetting( + final jalview.schemabinding.version2.Setting vSetting) + { + boolean removed = _settingList.remove(vSetting); + return removed; + } + + /** + * Method removeSettingAt. + * + * @param index + * @return the element removed from the collection + */ + public jalview.schemabinding.version2.Setting removeSettingAt( + final int index) + { + java.lang.Object obj = this._settingList.remove(index); + return (jalview.schemabinding.version2.Setting) obj; + } + + /** + * + * + * @param index + * @param vGroup + * @throws java.lang.IndexOutOfBoundsException + * if the index given is outside the bounds of the collection + */ + public void setGroup(final int index, + final jalview.schemabinding.version2.Group vGroup) + throws java.lang.IndexOutOfBoundsException + { + // check bounds for index + if (index < 0 || index >= this._groupList.size()) + { + throw new IndexOutOfBoundsException("setGroup: Index value '" + index + + "' not in range [0.." + (this._groupList.size() - 1) + "]"); } - /** - * - * - * @param vSettingArray - */ - public void setSetting( - final jalview.schemabinding.version2.Setting[] vSettingArray) { - //-- copy array - _settingList.clear(); - - for (int i = 0; i < vSettingArray.length; i++) { - this._settingList.add(vSettingArray[i]); - } + this._groupList.set(index, vGroup); + } + + /** + * + * + * @param vGroupArray + */ + public void setGroup( + final jalview.schemabinding.version2.Group[] vGroupArray) + { + // -- copy array + _groupList.clear(); + + for (int i = 0; i < vGroupArray.length; i++) + { + this._groupList.add(vGroupArray[i]); } - - /** - * Method unmarshal. - * - * @param reader - * @throws org.exolab.castor.xml.MarshalException if object is - * null or if any SAXException is thrown during marshaling - * @throws org.exolab.castor.xml.ValidationException if this - * object is an invalid instance according to the schema - * @return the unmarshaled - * jalview.schemabinding.version2.FeatureSettings - */ - public static jalview.schemabinding.version2.FeatureSettings unmarshal( - final java.io.Reader reader) - throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { - return (jalview.schemabinding.version2.FeatureSettings) Unmarshaller.unmarshal(jalview.schemabinding.version2.FeatureSettings.class, reader); + } + + /** + * + * + * @param index + * @param vSetting + * @throws java.lang.IndexOutOfBoundsException + * if the index given is outside the bounds of the collection + */ + public void setSetting(final int index, + final jalview.schemabinding.version2.Setting vSetting) + throws java.lang.IndexOutOfBoundsException + { + // check bounds for index + if (index < 0 || index >= this._settingList.size()) + { + throw new IndexOutOfBoundsException("setSetting: Index value '" + + index + "' not in range [0.." + + (this._settingList.size() - 1) + "]"); } - /** - * - * - * @throws org.exolab.castor.xml.ValidationException if this - * object is an invalid instance according to the schema - */ - public void validate( - ) - throws org.exolab.castor.xml.ValidationException { - org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator(); - validator.validate(this); + this._settingList.set(index, vSetting); + } + + /** + * + * + * @param vSettingArray + */ + public void setSetting( + final jalview.schemabinding.version2.Setting[] vSettingArray) + { + // -- copy array + _settingList.clear(); + + for (int i = 0; i < vSettingArray.length; i++) + { + this._settingList.add(vSettingArray[i]); } + } + + /** + * Method unmarshal. + * + * @param reader + * @throws org.exolab.castor.xml.MarshalException + * if object is null or if any SAXException is thrown during + * marshaling + * @throws org.exolab.castor.xml.ValidationException + * if this object is an invalid instance according to the schema + * @return the unmarshaled jalview.schemabinding.version2.FeatureSettings + */ + public static jalview.schemabinding.version2.FeatureSettings unmarshal( + final java.io.Reader reader) + throws org.exolab.castor.xml.MarshalException, + org.exolab.castor.xml.ValidationException + { + return (jalview.schemabinding.version2.FeatureSettings) Unmarshaller + .unmarshal( + jalview.schemabinding.version2.FeatureSettings.class, + reader); + } + + /** + * + * + * @throws org.exolab.castor.xml.ValidationException + * if this object is an invalid instance according to the schema + */ + public void validate() throws org.exolab.castor.xml.ValidationException + { + org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator(); + validator.validate(this); + } }