X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fschemes%2FBlosum62ColourScheme.java;h=70c7685ee68bb13fb852fd6114c8125067e353c4;hb=c3d1062cbc721f0dcaa46095cd9282c1ba52dc1f;hp=d914168a5a6180ff26e24c11c1b713fa319399db;hpb=47168f025aefdaa044802bd5f8f510ffe43a4808;p=jalview.git

diff --git a/src/jalview/schemes/Blosum62ColourScheme.java b/src/jalview/schemes/Blosum62ColourScheme.java
index d914168..70c7685 100755
--- a/src/jalview/schemes/Blosum62ColourScheme.java
+++ b/src/jalview/schemes/Blosum62ColourScheme.java
@@ -21,14 +21,13 @@
 package jalview.schemes;
 
 import jalview.analysis.AAFrequency;
-
-import java.awt.Color;
-import java.util.Map;
-
 import jalview.datamodel.AnnotatedCollectionI;
 import jalview.datamodel.SequenceCollectionI;
 import jalview.datamodel.SequenceI;
 
+import java.awt.Color;
+import java.util.Map;
+
 public class Blosum62ColourScheme extends ResidueColourScheme
 {
   public Blosum62ColourScheme()
@@ -59,6 +58,7 @@ public class Blosum62ColourScheme extends ResidueColourScheme
 
       if (max.indexOf(res) > -1)
       {
+        // TODO use a constant here?
         currentColour = new Color(154, 154, 255);
       }
       else
@@ -74,6 +74,7 @@ public class Blosum62ColourScheme extends ResidueColourScheme
 
         if (c > 0)
         {
+          // TODO use a constant here?
           currentColour = new Color(204, 204, 255);
         }
         else
@@ -94,10 +95,11 @@ public class Blosum62ColourScheme extends ResidueColourScheme
 
     return currentColour;
   }
+
   @Override
   public ColourSchemeI applyTo(AnnotatedCollectionI sg,
           Map<SequenceI, SequenceCollectionI> hiddenRepSequences)
-  { 
+  {
     ColourSchemeI newcs = super.applyTo(sg, hiddenRepSequences);
     return newcs;
   }