X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fschemes%2FClustalxColourScheme.java;h=04610ef6e377cdd8cc9df6355828e7d3570e5b45;hb=6834a636a0b72693041e2f1090c1123f215c9ec1;hp=9bc76c231a5ab8b5a949ef0613f7f75e34c6d25f;hpb=174230b4233d9ce80f94527768d2cd2f76da11ab;p=jalview.git

diff --git a/src/jalview/schemes/ClustalxColourScheme.java b/src/jalview/schemes/ClustalxColourScheme.java
index 9bc76c2..04610ef 100755
--- a/src/jalview/schemes/ClustalxColourScheme.java
+++ b/src/jalview/schemes/ClustalxColourScheme.java
@@ -86,8 +86,7 @@ public class ClustalxColourScheme
         }
         else
         {
-          res = ( (Integer) ResidueProperties.aaHash.get(seq.charAt(i) +
-              "")).intValue();
+          res =  ResidueProperties.aaIndex[seq.charAt(i)];
         }
 
         cons2[i][res]++;
@@ -258,7 +257,7 @@ public class ClustalxColourScheme
       return Color.white;
     }
 
-    int i = ( (Integer) ResidueProperties.aaHash.get(s)).intValue();
+    int i = ResidueProperties.aaIndex[s.charAt(0)];
 
     currentColour = Color.white;