X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fschemes%2FConsensus.java;h=520196f532f20b7e130bb938eb93950b0185964a;hb=1b1a1007c534a02fdbae76df0c084f215c7c4c21;hp=ac895bbb6f90f460037bc0940a152d73948ba59b;hpb=efc31b4a8d5cee63555586804a2b79c06bdb5a14;p=jalview.git

diff --git a/src/jalview/schemes/Consensus.java b/src/jalview/schemes/Consensus.java
index ac895bb..520196f 100755
--- a/src/jalview/schemes/Consensus.java
+++ b/src/jalview/schemes/Consensus.java
@@ -1,6 +1,6 @@
 /*
  * Jalview - A Sequence Alignment Editor and Viewer
- * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
  *
  * This program is free software; you can redistribute it and/or
  * modify it under the terms of the GNU General Public License
@@ -70,8 +70,7 @@ public class Consensus
 
     while (i < s.length())
     {
-      out[i] = ( (Integer) ResidueProperties.aaHash.get(s.substring(i,
-          i + 1))).intValue();
+      out[i] = ResidueProperties.aaIndex[s.charAt(i)];
       i++;
     }