X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fschemes%2FPIDColourScheme.java;h=8061e67c3bc0282028234031ab76fa7c97e307b3;hb=b0a90dcb797054f5e01a3b10969e782ef3aafa4a;hp=a79f0833da6dc4ffcc7d25e1b9b315cf6a10bc56;hpb=174230b4233d9ce80f94527768d2cd2f76da11ab;p=jalview.git

diff --git a/src/jalview/schemes/PIDColourScheme.java b/src/jalview/schemes/PIDColourScheme.java
index a79f083..8061e67 100755
--- a/src/jalview/schemes/PIDColourScheme.java
+++ b/src/jalview/schemes/PIDColourScheme.java
@@ -21,6 +21,7 @@ package jalview.schemes;
 import java.awt.*;
 
 import jalview.datamodel.*;
+import jalview.analysis.AAFrequency;
 
 public class PIDColourScheme
     extends ResidueColourScheme
@@ -43,6 +44,12 @@ public class PIDColourScheme
       s = String.valueOf(res -= ('a' - 'A'));
     }
 
+    if (consensus == null
+        || j >= consensus.length
+        || consensus[j]==null)
+    {
+      return Color.white;
+    }
 
     if ( (threshold != 0) && !aboveThreshold(s, j))
     {
@@ -56,7 +63,7 @@ public class PIDColourScheme
     if(consensus.length<=j)
       return Color.white;
 
-      if ( (Integer.parseInt(consensus[j].get("maxCount").toString()) != -1) &&
+      if ( (Integer.parseInt(consensus[j].get(AAFrequency.MAXCOUNT).toString()) != -1) &&
           consensus[j].contains(s))
       {
         sc = ( (Float) consensus[j].get(ignoreGaps)).floatValue();