X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fschemes%2FPIDColourScheme.java;h=bccf964af44727bb5b3dddff82c688973ca82507;hb=f6483e3414133aeadc65a9fb24f1b81cbbf3f39f;hp=f088bc535d811d7d1127a02e94b2240e48d5d235;hpb=153dd62dc91da13ae732600e6ea55ddbe15eab39;p=jalview.git diff --git a/src/jalview/schemes/PIDColourScheme.java b/src/jalview/schemes/PIDColourScheme.java index f088bc5..bccf964 100755 --- a/src/jalview/schemes/PIDColourScheme.java +++ b/src/jalview/schemes/PIDColourScheme.java @@ -1,26 +1,30 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6) - * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2) + * Copyright (C) 2014 The Jalview Authors * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - * + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. + * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * - * You should have received a copy of the GNU General Public License along with Jalview. If not, see . + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.schemes; -import java.awt.*; +import jalview.analysis.AAFrequency; +import jalview.datamodel.SequenceGroup; +import jalview.datamodel.SequenceI; -import jalview.analysis.*; -import jalview.datamodel.*; +import java.awt.Color; public class PIDColourScheme extends ResidueColourScheme { @@ -36,7 +40,8 @@ public class PIDColourScheme extends ResidueColourScheme this.thresholds = ResidueProperties.pidThresholds; } - public Color findColour(char c, int j) + @Override + public Color findColour(char c, int j, SequenceI seq) { if ('a' <= c && c <= 'z') {