X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fschemes%2FScoreColourScheme.java;h=1f9116c856defc110eaa95482b456cd11a94ce34;hb=9a88b5f931393037048bf4d8c1c3b871ae585b1c;hp=e238d797d83860d17a6cd62b2317c885e426a601;hpb=174230b4233d9ce80f94527768d2cd2f76da11ab;p=jalview.git

diff --git a/src/jalview/schemes/ScoreColourScheme.java b/src/jalview/schemes/ScoreColourScheme.java
index e238d79..1f9116c 100755
--- a/src/jalview/schemes/ScoreColourScheme.java
+++ b/src/jalview/schemes/ScoreColourScheme.java
@@ -94,12 +94,12 @@ public class ScoreColourScheme extends ResidueColourScheme
 
         char c = s.charAt(0);
 
-        if (jalview.util.Comparison.isGap((c)))
+        if (jalview.util.Comparison.isGap(c))
         {
             return Color.white;
         }
 
-        currentColour = colors[((Integer) ResidueProperties.aaHash.get(s)).intValue()];
+        currentColour = colors[ ResidueProperties.aaIndex[c] ];
 
         if(conservationColouring)
          applyConservation(j);