X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fschemes%2FScoreColourScheme.java;h=1f9116c856defc110eaa95482b456cd11a94ce34;hb=b0a90dcb797054f5e01a3b10969e782ef3aafa4a;hp=8d7a45ace544bcee33d23bf5240dc2a6160f89cc;hpb=c3c305755d392741176209a0274a47897ac4d8a8;p=jalview.git

diff --git a/src/jalview/schemes/ScoreColourScheme.java b/src/jalview/schemes/ScoreColourScheme.java
index 8d7a45a..1f9116c 100755
--- a/src/jalview/schemes/ScoreColourScheme.java
+++ b/src/jalview/schemes/ScoreColourScheme.java
@@ -94,12 +94,12 @@ public class ScoreColourScheme extends ResidueColourScheme
 
         char c = s.charAt(0);
 
-        if (jalview.util.Comparison.isGap((c)))
+        if (jalview.util.Comparison.isGap(c))
         {
             return Color.white;
         }
 
-        currentColour = colors[ ResidueProperties.aaIndex[s.charAt(0)] ];
+        currentColour = colors[ ResidueProperties.aaIndex[c] ];
 
         if(conservationColouring)
          applyConservation(j);