X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fschemes%2FScoreColourScheme.java;h=7eb920d022847579e360e033cfdcab1523cbbdd8;hb=be1666f6c9be6b18051b233abdde85962ac0c89a;hp=fd6b9fb515ae68fbca810d9154d01cb5ebd7ad97;hpb=153dd62dc91da13ae732600e6ea55ddbe15eab39;p=jalview.git
diff --git a/src/jalview/schemes/ScoreColourScheme.java b/src/jalview/schemes/ScoreColourScheme.java
index fd6b9fb..7eb920d 100755
--- a/src/jalview/schemes/ScoreColourScheme.java
+++ b/src/jalview/schemes/ScoreColourScheme.java
@@ -1,23 +1,28 @@
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.schemes;
-import java.awt.*;
+import jalview.datamodel.SequenceI;
+
+import java.awt.Color;
/**
* DOCUMENT ME!
@@ -46,9 +51,10 @@ public class ScoreColourScheme extends ResidueColourScheme
* @param max
* DOCUMENT ME!
*/
- public ScoreColourScheme(double[] scores, double min, double max)
+ public ScoreColourScheme(int symbolIndex[], double[] scores, double min,
+ double max)
{
- super();
+ super(symbolIndex);
this.scores = scores;
this.min = min;
@@ -85,7 +91,8 @@ public class ScoreColourScheme extends ResidueColourScheme
*
* @return DOCUMENT ME!
*/
- public Color findColour(char c, int j)
+ @Override
+ public Color findColour(char c, int j, SequenceI seq)
{
if (threshold > 0)
{