X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fstructure%2FSequenceListener.java;h=f8c5beaf67df08e8c12018d24e9b0fe8193035e9;hb=747167089ecf8d6afc70d417f5a20352e029bd95;hp=7668d3c7bf052eb66b541e72c7a1fcbf24866dc4;hpb=59d682209891099d46b960509907c79e3fb276fe;p=jalview.git
diff --git a/src/jalview/structure/SequenceListener.java b/src/jalview/structure/SequenceListener.java
index 7668d3c..f8c5bea 100644
--- a/src/jalview/structure/SequenceListener.java
+++ b/src/jalview/structure/SequenceListener.java
@@ -1,29 +1,46 @@
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
- * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.structure;
-import jalview.datamodel.*;
+import jalview.datamodel.SearchResultsI;
+import jalview.datamodel.SequenceI;
public interface SequenceListener
{
+ // TODO remove this? never called on SequenceListener type
public void mouseOverSequence(SequenceI sequence, int index, int pos);
- public void highlightSequence(jalview.datamodel.SearchResults results);
+ /**
+ * Highlights any position(s) represented by the search results and
+ * (optionally) returns an informative message about the position(s)
+ * higlighted
+ *
+ * @param results
+ * @return
+ */
+ public String highlightSequence(SearchResultsI results);
+ // TODO remove this? never called
public void updateColours(SequenceI sequence, int index);
+
+ public VamsasSource getVamsasSource();
+
}