X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fviewmodel%2FAlignmentViewport.java;fp=src%2Fjalview%2Fviewmodel%2FAlignmentViewport.java;h=6581bef5ccf9866d3a6ddf7f252a2c9cec59ff25;hb=3f06233fb50a383439b4e0f28405b8681c2e2d72;hp=c16fdceb8c9371ce38877bf4d9577d08c5bd3087;hpb=415613c495f926a9cc4a7d95f4e3eaa0ccdcc171;p=jalview.git

diff --git a/src/jalview/viewmodel/AlignmentViewport.java b/src/jalview/viewmodel/AlignmentViewport.java
index c16fdce..6581bef 100644
--- a/src/jalview/viewmodel/AlignmentViewport.java
+++ b/src/jalview/viewmodel/AlignmentViewport.java
@@ -1601,7 +1601,7 @@ public abstract class AlignmentViewport implements AlignViewportI,
     }
     else
     {
-      if (hasHiddenRows())
+      if (hasHiddenRows() && isExportHiddenSeqs)
       {
         iSize = alignment.getHiddenSequences().getFullAlignment()
                 .getHeight();
@@ -2719,4 +2719,18 @@ public abstract class AlignmentViewport implements AlignViewportI,
       }
     }
   }
+
+  private boolean isExportHiddenSeqs = true;
+
+  @Override
+  public void setExportHiddenSeqs(boolean isExportHiddenSeqs)
+  {
+    this.isExportHiddenSeqs = isExportHiddenSeqs;
+  }
+
+  @Override
+  public boolean isExportHiddenSeqs()
+  {
+    return isExportHiddenSeqs;
+  }
 }