X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fviewmodel%2Fseqfeatures%2FFeatureRendererModel.java;h=19c6ca889d50bcd6524a84b522cbda0b3e082002;hb=09e3cf7d0e936a9b69fc8f6c7315195694c5127e;hp=30d14c2a10f644667d0e48fa1bb34a160349dd6e;hpb=497958b4e5217efaa3ddeece38f38c3a6e98cb96;p=jalview.git

diff --git a/src/jalview/viewmodel/seqfeatures/FeatureRendererModel.java b/src/jalview/viewmodel/seqfeatures/FeatureRendererModel.java
index 30d14c2..19c6ca8 100644
--- a/src/jalview/viewmodel/seqfeatures/FeatureRendererModel.java
+++ b/src/jalview/viewmodel/seqfeatures/FeatureRendererModel.java
@@ -246,6 +246,7 @@ public abstract class FeatureRendererModel implements
   {
     ArrayList<SequenceFeature> tmp = new ArrayList<SequenceFeature>();
     SequenceFeature[] features = sequence.getSequenceFeatures();
+
     if (features != null)
     {
       for (int i = 0; i < features.length; i++)
@@ -322,9 +323,7 @@ public abstract class FeatureRendererModel implements
     for (int i = 0; i < alignment.getHeight(); i++)
     {
       SequenceI asq = alignment.getSequenceAt(i);
-      SequenceI dasq = asq.getDatasetSequence();
-      SequenceFeature[] features = dasq != null ? dasq
-              .getSequenceFeatures() : asq.getSequenceFeatures();
+      SequenceFeature[] features = asq.getSequenceFeatures();
 
       if (features == null)
       {
@@ -370,7 +369,7 @@ public abstract class FeatureRendererModel implements
         {
           allfeatures.add(features[index].getType());
         }
-        if (features[index].score != Float.NaN)
+        if (!Float.isNaN(features[index].score))
         {
           int nonpos = features[index].getBegin() >= 1 ? 0 : 1;
           float[][] mm = (float[][]) minmax.get(features[index].getType());
@@ -900,7 +899,7 @@ public abstract class FeatureRendererModel implements
       {
         for (int i = 0; i < typ.length; i++)
         {
-          if (feature_disp.isVisible(typ[i]))
+          if (!feature_disp.isVisible(typ[i]))
           {
             typ[i] = null;
           }