X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fws%2Fdbsources%2FRfamFull.java;h=396511c82fa26f7f278a291b07fa9a16c4ca3a6b;hb=ab58313e7bb31264ddb2715a1c548cdc789d7fa6;hp=3703e41e65778943be1b7e7e0548662d3fae559d;hpb=59d682209891099d46b960509907c79e3fb276fe;p=jalview.git
diff --git a/src/jalview/ws/dbsources/RfamFull.java b/src/jalview/ws/dbsources/RfamFull.java
index 3703e41..396511c 100644
--- a/src/jalview/ws/dbsources/RfamFull.java
+++ b/src/jalview/ws/dbsources/RfamFull.java
@@ -1,45 +1,42 @@
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
- * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.ws.dbsources;
-import jalview.ws.seqfetcher.DbSourceProxy;
-
/**
* Flyweight class specifying retrieval of Full family alignments from RFAM
*
* @author Lauren Michelle Lui
*
*/
-public class RfamFull extends Rfam implements DbSourceProxy
+public class RfamFull extends Rfam
{
public RfamFull()
{
super();
}
- /*
- * (non-Javadoc)
- *
- * @see jalview.ws.dbsources.Rfam#getXFAMURL()
- */
- protected String getXFAMURL()
+ @Override
+ public String getURLSuffix()
{
- return "http://rfam.sanger.ac.uk/family/alignment/download/format?alnType=full&nseLabels=0&format=stockholm&acc=";
+ return "/alignment/full" + GZIPPED;
}
/*
@@ -47,16 +44,19 @@ public class RfamFull extends Rfam implements DbSourceProxy
*
* @see jalview.ws.seqfetcher.DbSourceProxy#getDbName()
*/
+ @Override
public String getDbName()
{
return "RFAM (Full)";
}
+ @Override
public String getDbSource()
{
return getDbName(); // so we have unique DbSource string.
}
+ @Override
public String getTestQuery()
{
// Can be retrieved from http://rfam.janelia.org/cgi-bin/getdesc?acc=RF00014
@@ -65,9 +65,15 @@ public class RfamFull extends Rfam implements DbSourceProxy
return "RF00014";
}
+ @Override
public String getDbVersion()
{
return null;
}
+ @Override
+ public int getTier()
+ {
+ return 0;
+ }
}