X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fws%2Fdbsources%2FRfamSeed.java;h=a3b6294e9c602e3349b62494a31a6203fe719397;hb=refs%2Fheads%2FRelease_2_9_0b1_Branch;hp=47ba60d0f05bd3091d8a6caaf3bb4b882329e963;hpb=b2f9a8d7bce642ff4011bc6d49e02bb0569fbb11;p=jalview.git

diff --git a/src/jalview/ws/dbsources/RfamSeed.java b/src/jalview/ws/dbsources/RfamSeed.java
index 47ba60d..a3b6294 100644
--- a/src/jalview/ws/dbsources/RfamSeed.java
+++ b/src/jalview/ws/dbsources/RfamSeed.java
@@ -1,19 +1,21 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
+ * Copyright (C) 2015 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
  *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.ws.dbsources;
@@ -38,33 +40,43 @@ public class RfamSeed extends Rfam implements DbSourceProxy
    * 
    * @see jalview.ws.dbsources.Rfam#getRFAMURL()
    */
+  @Override
   protected String getXFAMURL()
   {
-    return "http://rfam.sanger.ac.uk/family/alignment/download/format?alnType=seed&nseLabels=0&format=stockholm&acc=";
+    return "http://rfam.xfam.org/family/";
     // Janelia Farms url
     // "http://rfam.janelia.org/cgi-bin/getalignment?type=seed&fmt=stockholm&acc=";
   }
 
+  @Override
+  public String getXFAMURLSUFFIX()
+  {
+    return "/alignment";
+  }
   /*
    * (non-Javadoc)
    * 
    * @see jalview.ws.seqfetcher.DbSourceProxy#getDbName()
    */
+  @Override
   public String getDbName()
   {
     return "RFAM (Seed)";
   }
 
+  @Override
   public String getDbSource()
   {
     return getDbName(); // so we have unique DbSource string.
   }
 
+  @Override
   public String getTestQuery()
   {
     return "RF00014";
   } // http://rfam.janelia.org/cgi-bin/getdesc?acc=RF00014
 
+  @Override
   public String getDbVersion()
   {
     return null;