X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fws%2Fjws1%2FJPredClient.java;h=1e483e3094b9a1b6151aac36bd0b9f9b0baa053c;hb=8edebdd9789b2d93fb8f9db24b8be2c1e6317690;hp=2e000f815733859d5a47db7ca1b32c0d38191869;hpb=eee8dfa05eeea5b7cc295ba020647842502efe63;p=jalview.git

diff --git a/src/jalview/ws/jws1/JPredClient.java b/src/jalview/ws/jws1/JPredClient.java
index 2e000f8..1e483e3 100644
--- a/src/jalview/ws/jws1/JPredClient.java
+++ b/src/jalview/ws/jws1/JPredClient.java
@@ -21,6 +21,7 @@
 package jalview.ws.jws1;
 
 import jalview.analysis.AlignSeq;
+import jalview.analysis.SeqsetUtils;
 import jalview.bin.Cache;
 import jalview.datamodel.AlignmentView;
 import jalview.datamodel.SeqCigar;
@@ -89,7 +90,7 @@ public class JPredClient extends WS1Client
    *          visible regions
    */
   private void startJPredClient(String title, boolean msa,
-          jalview.datamodel.AlignmentView alview, AlignFrame parentFrame,
+          AlignmentView alview, AlignFrame parentFrame,
           boolean viewonly)
   {
     AlignmentView input = alview;
@@ -128,8 +129,7 @@ public class JPredClient extends WS1Client
         aln[i] = msf[i].getSeq('-');
       }
 
-      Hashtable SequenceInfo = jalview.analysis.SeqsetUtils.uniquify(aln,
-              true);
+      Hashtable SequenceInfo = SeqsetUtils.uniquify(aln, true);
       if (viewonly)
       {
         // Remove hidden regions from sequence objects.
@@ -161,8 +161,7 @@ public class JPredClient extends WS1Client
               + (viewonly ? "visible " : "") + "sequence " + seq.getName()
               + " from " + title;
       String seqname = seq.getName();
-      Hashtable SequenceInfo = jalview.analysis.SeqsetUtils
-              .SeqCharacterHash(seq);
+      Hashtable SequenceInfo = SeqsetUtils.SeqCharacterHash(seq);
       if (viewonly)
       {
         // Remove hidden regions from input sequence
@@ -248,7 +247,7 @@ public class JPredClient extends WS1Client
       aln[i] = new jalview.datamodel.Sequence(msf[i]);
     }
 
-    Hashtable SequenceInfo = jalview.analysis.SeqsetUtils.uniquify(aln,
+    Hashtable SequenceInfo = SeqsetUtils.uniquify(aln,
             true);
 
     Jpred server = locateWebService();
@@ -276,8 +275,7 @@ public class JPredClient extends WS1Client
     String altitle = "JNet prediction for sequence " + seq.getName()
             + " from " + title;
 
-    Hashtable SequenceInfo = jalview.analysis.SeqsetUtils
-            .SeqCharacterHash(seq);
+    Hashtable SequenceInfo = SeqsetUtils.SeqCharacterHash(seq);
 
     Jpred server = locateWebService();
     if (server == null)