X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fws%2Fjws2%2FAADisorderClient.java;h=96635c9a61f191bbf67f32d00eb24d90541acec7;hb=51f4e1c750d0de8937e69788f7b14c6120fd310f;hp=3c19dc52f0e9eb7ff07e0c1150359fe81c1e6815;hpb=cfd4c0f73bdba694e2d854684a8a3f679ccdba27;p=jalview.git

diff --git a/src/jalview/ws/jws2/AADisorderClient.java b/src/jalview/ws/jws2/AADisorderClient.java
index 3c19dc5..96635c9 100644
--- a/src/jalview/ws/jws2/AADisorderClient.java
+++ b/src/jalview/ws/jws2/AADisorderClient.java
@@ -181,7 +181,7 @@ public class AADisorderClient extends JabawsAlignCalcWorker implements
       {
         boolean sameGroup = false;
         SequenceI dseq, aseq, seq = seqNames.get(seqId);
-        int base = seq.getStart() - 1;
+        int base = seq.findPosition(start)-1;
         aseq = seq;
         while ((dseq = seq).getDatasetSequence() != null)
         {