X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fws%2Fjws2%2Fjabaws2%2FJws2Instance.java;h=56ea2444ed812d45310b657749482fca5d18b6b9;hb=eee8dfa05eeea5b7cc295ba020647842502efe63;hp=09f4a48ce730803cb41d063f10172fb33d792c69;hpb=59d682209891099d46b960509907c79e3fb276fe;p=jalview.git

diff --git a/src/jalview/ws/jws2/jabaws2/Jws2Instance.java b/src/jalview/ws/jws2/jabaws2/Jws2Instance.java
index 09f4a48..56ea244 100644
--- a/src/jalview/ws/jws2/jabaws2/Jws2Instance.java
+++ b/src/jalview/ws/jws2/jabaws2/Jws2Instance.java
@@ -1,24 +1,28 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
- * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
  *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.ws.jws2.jabaws2;
 
 import jalview.gui.AlignFrame;
 import jalview.gui.Desktop;
+import jalview.util.MessageManager;
 import jalview.ws.jws2.JabaParamStore;
 import jalview.ws.jws2.MsaWSClient;
 import jalview.ws.jws2.SequenceAnnotationWSClient;
@@ -48,6 +52,20 @@ public class Jws2Instance
 
   public String docUrl;
 
+  /**
+   * 
+   * @param hosturl
+   *          Service endpoint
+   * @param serviceType
+   *          Category for this service's analysis
+   * @param action
+   *          text describing their action that service performs (eg 'aligning',
+   *          'analysing')
+   * @param description
+   *          Description from JABAWS registry
+   * @param service
+   *          JABAWS registry ID for service
+   */
   public Jws2Instance(String hosturl, String serviceType, String action,
           String description, JABAService service)
   {
@@ -139,9 +157,7 @@ public class Jws2Instance
     {
       return ((SequenceAnnotation) service).getRunnerOptions();
     }
-    throw new Error(
-            "Implementation Error: Runner Config not available for a JABAWS service of type "
-                    + serviceType + " (" + service.getClass() + ")");
+    throw new Error(MessageManager.formatMessage("error.implementation_error_runner_config_not_available", new String[]{serviceType,service.getClass().toString()}));
   }
 
   @Override
@@ -173,6 +189,8 @@ public class Jws2Instance
                         : null));
       } catch (Exception ex)
       {
+        System.err.println("Unexpected exception creating JabaParamStore.");
+        ex.printStackTrace();
       }
 
     }
@@ -222,4 +240,11 @@ public class Jws2Instance
   {
     return "java:" + serviceType;
   }
+
+  jalview.ws.uimodel.AlignAnalysisUIText aaui;
+
+  public jalview.ws.uimodel.AlignAnalysisUIText getAlignAnalysisUI()
+  {
+    return aaui;
+  }
 }