X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fxml%2Fbinding%2Fjalview%2FSequenceSet.java;h=a915d94fecfad5d42d7a2e1771211416736c2c83;hb=570267624a5d5e0192895edbd4c25f25f3ea15f0;hp=d6464b3551cecfd84c563aa4273cc1a6f6b3c5ba;hpb=57738a1f3c19b1c3a00bd3ac5108f8cd0af32f99;p=jalview.git diff --git a/src/jalview/xml/binding/jalview/SequenceSet.java b/src/jalview/xml/binding/jalview/SequenceSet.java index d6464b3..a915d94 100644 --- a/src/jalview/xml/binding/jalview/SequenceSet.java +++ b/src/jalview/xml/binding/jalview/SequenceSet.java @@ -1,10 +1,11 @@ // -// This file was generated by the Eclipse Implementation of JAXB, v2.3.3 -// See https://eclipse-ee4j.github.io/jaxb-ri +// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 +// See http://java.sun.com/xml/jaxb // Any modifications to this file will be lost upon recompilation of the source schema. -// Generated on: 2021.08.30 at 11:05:22 AM BST +// Generated on: 2023.03.17 at 05:31:44 PM GMT // + package jalview.xml.binding.jalview; import java.util.ArrayList; @@ -16,287 +17,302 @@ import javax.xml.bind.annotation.XmlElement; import javax.xml.bind.annotation.XmlRootElement; import javax.xml.bind.annotation.XmlType; + /** - * <p>Java class for anonymous complex type. + *
Java class for anonymous complex type. * - * <p>The following schema fragment specifies the expected content - * contained within this class. + *
The following schema fragment specifies the expected content contained within this class. * - * <pre> <complexType> <complexContent> - * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType"> - * <sequence> <element - * ref="{www.vamsas.ac.uk/jalview/version2}Sequence" maxOccurs="unbounded" - * minOccurs="0"/> <element - * ref="{www.vamsas.ac.uk/jalview/version2}Annotation" maxOccurs="unbounded" - * minOccurs="0"/> <element name="sequenceSetProperties" - * maxOccurs="unbounded" minOccurs="0"> <complexType> - * <complexContent> <restriction - * base="{http://www.w3.org/2001/XMLSchema}anyType"> <attribute - * name="key" type="{http://www.w3.org/2001/XMLSchema}string" /> - * <attribute name="value" - * type="{http://www.w3.org/2001/XMLSchema}string" /> - * </restriction> </complexContent> - * </complexType> </element> <element - * ref="{www.vamsas.ac.uk/jalview/version2}AlcodonFrame" maxOccurs="unbounded" - * minOccurs="0"/> </sequence> <attribute - * name="gapChar" use="required" type="{http://www.w3.org/2001/XMLSchema}string" - * /> <attribute name="datasetId" - * type="{http://www.w3.org/2001/XMLSchema}string" /> - * </restriction> </complexContent> - * </complexType> </pre> + *
+ * <complexType> + * <complexContent> + * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType"> + * <sequence> + * <element ref="{www.vamsas.ac.uk/jalview/version2}Sequence" maxOccurs="unbounded" minOccurs="0"/> + * <element ref="{www.vamsas.ac.uk/jalview/version2}Annotation" maxOccurs="unbounded" minOccurs="0"/> + * <element name="sequenceSetProperties" maxOccurs="unbounded" minOccurs="0"> + * <complexType> + * <complexContent> + * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType"> + * <attribute name="key" type="{http://www.w3.org/2001/XMLSchema}string" /> + * <attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" /> + * </restriction> + * </complexContent> + * </complexType> + * </element> + * <element ref="{www.vamsas.ac.uk/jalview/version2}AlcodonFrame" maxOccurs="unbounded" minOccurs="0"/> + * </sequence> + * <attribute name="gapChar" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /> + * <attribute name="datasetId" type="{http://www.w3.org/2001/XMLSchema}string" /> + * </restriction> + * </complexContent> + * </complexType> + ** * */ @XmlAccessorType(XmlAccessType.FIELD) -@XmlType( - name = "", - propOrder = - { "sequence", "annotation", "sequenceSetProperties", "alcodonFrame" }) +@XmlType(name = "", propOrder = { + "sequence", + "annotation", + "sequenceSetProperties", + "alcodonFrame" +}) @XmlRootElement(name = "SequenceSet") -public class SequenceSet -{ - - @XmlElement(name = "Sequence") - protected List
+ * This accessor method returns a reference to the live list,
+ * not a snapshot. Therefore any modification you make to the
+ * returned list will be present inside the JAXB object.
+ * This is why there is not a set
method for the sequence property.
+ *
+ *
+ * For example, to add a new item, do as follows: + *
+ * getSequence().add(newItem); + *+ * + * + *
+ * Objects of the following type(s) are allowed in the list
+ * {@link Sequence }
+ *
+ *
+ */
+ public List
+ * This accessor method returns a reference to the live list,
+ * not a snapshot. Therefore any modification you make to the
+ * returned list will be present inside the JAXB object.
+ * This is why there is not a
+ * For example, to add a new item, do as follows:
+ *
+ * Objects of the following type(s) are allowed in the list
+ * {@link Annotation }
+ *
+ *
+ */
+ public List
+ * This accessor method returns a reference to the live list,
+ * not a snapshot. Therefore any modification you make to the
+ * returned list will be present inside the JAXB object.
+ * This is why there is not a
+ * For example, to add a new item, do as follows:
+ *
+ * Objects of the following type(s) are allowed in the list
+ * {@link SequenceSet.SequenceSetProperties }
+ *
+ *
+ */
+ public List
+ * This accessor method returns a reference to the live list,
+ * not a snapshot. Therefore any modification you make to the
+ * returned list will be present inside the JAXB object.
+ * This is why there is not a
+ * For example, to add a new item, do as follows:
+ *
+ * Objects of the following type(s) are allowed in the list
+ * {@link AlcodonFrame }
+ *
+ *
+ */
+ public List Java class for anonymous complex type.
+ *
+ * The following schema fragment specifies the expected content contained within this class.
+ *
+ * set
method for the annotation property.
+ *
+ *
+ * getAnnotation().add(newItem);
+ *
+ *
+ *
+ * set
method for the sequenceSetProperties property.
+ *
+ *
+ * getSequenceSetProperties().add(newItem);
+ *
+ *
+ *
+ * set
method for the alcodonFrame property.
+ *
+ *
+ * getAlcodonFrame().add(newItem);
+ *
+ *
+ *
+ *
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="key" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ *
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "")
+ public static class SequenceSetProperties {
+
+ @XmlAttribute(name = "key")
+ protected String key;
+ @XmlAttribute(name = "value")
+ protected String value;
+
+ /**
+ * Gets the value of the key property.
+ *
+ * @return
+ * possible object is
+ * {@link String }
+ *
+ */
+ public String getKey() {
+ return key;
+ }
+
+ /**
+ * Sets the value of the key property.
+ *
+ * @param value
+ * allowed object is
+ * {@link String }
+ *
+ */
+ public void setKey(String value) {
+ this.key = value;
+ }
+
+ /**
+ * Gets the value of the value property.
+ *
+ * @return
+ * possible object is
+ * {@link String }
+ *
+ */
+ public String getValue() {
+ return value;
+ }
+
+ /**
+ * Sets the value of the value property.
+ *
+ * @param value
+ * allowed object is
+ * {@link String }
+ *
+ */
+ public void setValue(String value) {
+ this.value = value;
+ }
+
+ }
}