- * Java class for anonymous complex type. + *
Java class for anonymous complex type. * - *
- * The following schema fragment specifies the expected content contained within - * this class. + *
The following schema fragment specifies the expected content contained within this class. * *
* <complexType>
@@ -66,594 +65,561 @@ import javax.xml.datatype.XMLGregorianCalendar;
*
*/
@XmlAccessorType(XmlAccessType.FIELD)
-@XmlType(
- name = "",
- propOrder =
- { "accession", "name", "protein", "gene", "organism", "organismHost",
- "geneLocation", "reference", "comment", "dbReference",
- "proteinExistence", "keyword", "feature", "evidence", "sequence" })
+@XmlType(name = "", propOrder = {
+ "accession",
+ "name",
+ "protein",
+ "gene",
+ "organism",
+ "organismHost",
+ "geneLocation",
+ "reference",
+ "comment",
+ "dbReference",
+ "proteinExistence",
+ "keyword",
+ "feature",
+ "evidence",
+ "sequence"
+})
@XmlRootElement(name = "entry")
-public class Entry
-{
-
- @XmlElement(required = true)
- protected List accession;
-
- @XmlElement(required = true)
- protected List name;
-
- @XmlElement(required = true)
- protected ProteinType protein;
-
- protected List gene;
+public class Entry {
+
+ @XmlElement(required = true)
+ protected List accession;
+ @XmlElement(required = true)
+ protected List name;
+ @XmlElement(required = true)
+ protected ProteinType protein;
+ protected List gene;
+ @XmlElement(required = true)
+ protected OrganismType organism;
+ protected List organismHost;
+ protected List geneLocation;
+ @XmlElement(required = true)
+ protected List reference;
+ @XmlElement(nillable = true)
+ protected List comment;
+ protected List dbReference;
+ @XmlElement(required = true)
+ protected ProteinExistenceType proteinExistence;
+ protected List keyword;
+ protected List feature;
+ protected List evidence;
+ @XmlElement(required = true)
+ protected SequenceType sequence;
+ @XmlAttribute(name = "dataset", required = true)
+ protected String dataset;
+ @XmlAttribute(name = "created", required = true)
+ @XmlSchemaType(name = "date")
+ protected XMLGregorianCalendar created;
+ @XmlAttribute(name = "modified", required = true)
+ @XmlSchemaType(name = "date")
+ protected XMLGregorianCalendar modified;
+ @XmlAttribute(name = "version", required = true)
+ protected int version;
+
+ /**
+ * Gets the value of the accession property.
+ *
+ *
+ * This accessor method returns a reference to the live list,
+ * not a snapshot. Therefore any modification you make to the
+ * returned list will be present inside the JAXB object.
+ * This is why there is not a set method for the accession property.
+ *
+ *
+ * For example, to add a new item, do as follows:
+ *
+ * getAccession().add(newItem);
+ *
+ *
+ *
+ *
+ * Objects of the following type(s) are allowed in the list
+ * {@link String }
+ *
+ *
+ */
+ public List getAccession() {
+ if (accession == null) {
+ accession = new ArrayList();
+ }
+ return this.accession;
+ }
- @XmlElement(required = true)
- protected OrganismType organism;
+ /**
+ * Gets the value of the name property.
+ *
+ *
+ * This accessor method returns a reference to the live list,
+ * not a snapshot. Therefore any modification you make to the
+ * returned list will be present inside the JAXB object.
+ * This is why there is not a set method for the name property.
+ *
+ *
+ * For example, to add a new item, do as follows:
+ *
+ * getName().add(newItem);
+ *
+ *
+ *
+ *
+ * Objects of the following type(s) are allowed in the list
+ * {@link String }
+ *
+ *
+ */
+ public List getName() {
+ if (name == null) {
+ name = new ArrayList();
+ }
+ return this.name;
+ }
- protected List organismHost;
+ /**
+ * Gets the value of the protein property.
+ *
+ * @return
+ * possible object is
+ * {@link ProteinType }
+ *
+ */
+ public ProteinType getProtein() {
+ return protein;
+ }
- protected List geneLocation;
+ /**
+ * Sets the value of the protein property.
+ *
+ * @param value
+ * allowed object is
+ * {@link ProteinType }
+ *
+ */
+ public void setProtein(ProteinType value) {
+ this.protein = value;
+ }
- @XmlElement(required = true)
- protected List reference;
+ /**
+ * Gets the value of the gene property.
+ *
+ *
+ * This accessor method returns a reference to the live list,
+ * not a snapshot. Therefore any modification you make to the
+ * returned list will be present inside the JAXB object.
+ * This is why there is not a set method for the gene property.
+ *
+ *
+ * For example, to add a new item, do as follows:
+ *
+ * getGene().add(newItem);
+ *
+ *
+ *
+ *
+ * Objects of the following type(s) are allowed in the list
+ * {@link GeneType }
+ *
+ *
+ */
+ public List getGene() {
+ if (gene == null) {
+ gene = new ArrayList();
+ }
+ return this.gene;
+ }
- @XmlElement(nillable = true)
- protected List comment;
+ /**
+ * Gets the value of the organism property.
+ *
+ * @return
+ * possible object is
+ * {@link OrganismType }
+ *
+ */
+ public OrganismType getOrganism() {
+ return organism;
+ }
- protected List dbReference;
+ /**
+ * Sets the value of the organism property.
+ *
+ * @param value
+ * allowed object is
+ * {@link OrganismType }
+ *
+ */
+ public void setOrganism(OrganismType value) {
+ this.organism = value;
+ }
- @XmlElement(required = true)
- protected ProteinExistenceType proteinExistence;
+ /**
+ * Gets the value of the organismHost property.
+ *
+ *
+ * This accessor method returns a reference to the live list,
+ * not a snapshot. Therefore any modification you make to the
+ * returned list will be present inside the JAXB object.
+ * This is why there is not a set method for the organismHost property.
+ *
+ *
+ * For example, to add a new item, do as follows:
+ *
+ * getOrganismHost().add(newItem);
+ *
+ *
+ *
+ *
+ * Objects of the following type(s) are allowed in the list
+ * {@link OrganismType }
+ *
+ *
+ */
+ public List getOrganismHost() {
+ if (organismHost == null) {
+ organismHost = new ArrayList();
+ }
+ return this.organismHost;
+ }
- protected List keyword;
+ /**
+ * Gets the value of the geneLocation property.
+ *
+ *
+ * This accessor method returns a reference to the live list,
+ * not a snapshot. Therefore any modification you make to the
+ * returned list will be present inside the JAXB object.
+ * This is why there is not a set method for the geneLocation property.
+ *
+ *
+ * For example, to add a new item, do as follows:
+ *
+ * getGeneLocation().add(newItem);
+ *
+ *
+ *
+ *
+ * Objects of the following type(s) are allowed in the list
+ * {@link GeneLocationType }
+ *
+ *
+ */
+ public List getGeneLocation() {
+ if (geneLocation == null) {
+ geneLocation = new ArrayList();
+ }
+ return this.geneLocation;
+ }
- protected List feature;
+ /**
+ * Gets the value of the reference property.
+ *
+ *
+ * This accessor method returns a reference to the live list,
+ * not a snapshot. Therefore any modification you make to the
+ * returned list will be present inside the JAXB object.
+ * This is why there is not a set method for the reference property.
+ *
+ *
+ * For example, to add a new item, do as follows:
+ *
+ * getReference().add(newItem);
+ *
+ *
+ *
+ *
+ * Objects of the following type(s) are allowed in the list
+ * {@link ReferenceType }
+ *
+ *
+ */
+ public List getReference() {
+ if (reference == null) {
+ reference = new ArrayList();
+ }
+ return this.reference;
+ }
- protected List evidence;
+ /**
+ * Gets the value of the comment property.
+ *
+ *
+ * This accessor method returns a reference to the live list,
+ * not a snapshot. Therefore any modification you make to the
+ * returned list will be present inside the JAXB object.
+ * This is why there is not a set method for the comment property.
+ *
+ *
+ * For example, to add a new item, do as follows:
+ *
+ * getComment().add(newItem);
+ *
+ *
+ *
+ *
+ * Objects of the following type(s) are allowed in the list
+ * {@link CommentType }
+ *
+ *
+ */
+ public List getComment() {
+ if (comment == null) {
+ comment = new ArrayList();
+ }
+ return this.comment;
+ }
- @XmlElement(required = true)
- protected SequenceType sequence;
+ /**
+ * Gets the value of the dbReference property.
+ *
+ *
+ * This accessor method returns a reference to the live list,
+ * not a snapshot. Therefore any modification you make to the
+ * returned list will be present inside the JAXB object.
+ * This is why there is not a set method for the dbReference property.
+ *
+ *
+ * For example, to add a new item, do as follows:
+ *
+ * getDbReference().add(newItem);
+ *
+ *
+ *
+ *
+ * Objects of the following type(s) are allowed in the list
+ * {@link DbReferenceType }
+ *
+ *
+ */
+ public List getDbReference() {
+ if (dbReference == null) {
+ dbReference = new ArrayList();
+ }
+ return this.dbReference;
+ }
- @XmlAttribute(name = "dataset", required = true)
- protected String dataset;
+ /**
+ * Gets the value of the proteinExistence property.
+ *
+ * @return
+ * possible object is
+ * {@link ProteinExistenceType }
+ *
+ */
+ public ProteinExistenceType getProteinExistence() {
+ return proteinExistence;
+ }
- @XmlAttribute(name = "created", required = true)
- @XmlSchemaType(name = "date")
- protected XMLGregorianCalendar created;
+ /**
+ * Sets the value of the proteinExistence property.
+ *
+ * @param value
+ * allowed object is
+ * {@link ProteinExistenceType }
+ *
+ */
+ public void setProteinExistence(ProteinExistenceType value) {
+ this.proteinExistence = value;
+ }
- @XmlAttribute(name = "modified", required = true)
- @XmlSchemaType(name = "date")
- protected XMLGregorianCalendar modified;
+ /**
+ * Gets the value of the keyword property.
+ *
+ *
+ * This accessor method returns a reference to the live list,
+ * not a snapshot. Therefore any modification you make to the
+ * returned list will be present inside the JAXB object.
+ * This is why there is not a set method for the keyword property.
+ *
+ *
+ * For example, to add a new item, do as follows:
+ *
+ * getKeyword().add(newItem);
+ *
+ *
+ *
+ *
+ * Objects of the following type(s) are allowed in the list
+ * {@link KeywordType }
+ *
+ *
+ */
+ public List getKeyword() {
+ if (keyword == null) {
+ keyword = new ArrayList();
+ }
+ return this.keyword;
+ }
- @XmlAttribute(name = "version", required = true)
- protected int version;
+ /**
+ * Gets the value of the feature property.
+ *
+ *
+ * This accessor method returns a reference to the live list,
+ * not a snapshot. Therefore any modification you make to the
+ * returned list will be present inside the JAXB object.
+ * This is why there is not a set method for the feature property.
+ *
+ *
+ * For example, to add a new item, do as follows:
+ *
+ * getFeature().add(newItem);
+ *
+ *
+ *
+ *
+ * Objects of the following type(s) are allowed in the list
+ * {@link FeatureType }
+ *
+ *
+ */
+ public List getFeature() {
+ if (feature == null) {
+ feature = new ArrayList();
+ }
+ return this.feature;
+ }
- /**
- * Gets the value of the accession property.
- *
- *
- * This accessor method returns a reference to the live list, not a snapshot.
- * Therefore any modification you make to the returned list will be present
- * inside the JAXB object. This is why there is not a set method
- * for the accession property.
- *
- *
- * For example, to add a new item, do as follows:
- *
- *
- * getAccession().add(newItem);
- *
- *
- *
- *
- * Objects of the following type(s) are allowed in the list {@link String }
- *
- *
- */
- public List getAccession()
- {
- if (accession == null)
- {
- accession = new ArrayList();
+ /**
+ * Gets the value of the evidence property.
+ *
+ *
+ * This accessor method returns a reference to the live list,
+ * not a snapshot. Therefore any modification you make to the
+ * returned list will be present inside the JAXB object.
+ * This is why there is not a set method for the evidence property.
+ *
+ *
+ * For example, to add a new item, do as follows:
+ *
+ * getEvidence().add(newItem);
+ *
+ *
+ *
+ *
+ * Objects of the following type(s) are allowed in the list
+ * {@link EvidenceType }
+ *
+ *
+ */
+ public List getEvidence() {
+ if (evidence == null) {
+ evidence = new ArrayList();
+ }
+ return this.evidence;
}
- return this.accession;
- }
-
- /**
- * Gets the value of the name property.
- *
- *
- * This accessor method returns a reference to the live list, not a snapshot.
- * Therefore any modification you make to the returned list will be present
- * inside the JAXB object. This is why there is not a set method
- * for the name property.
- *
- *
- * For example, to add a new item, do as follows:
- *
- *
- * getName().add(newItem);
- *
- *
- *
- *
- * Objects of the following type(s) are allowed in the list {@link String }
- *
- *
- */
- public List getName()
- {
- if (name == null)
- {
- name = new ArrayList();
+
+ /**
+ * Gets the value of the sequence property.
+ *
+ * @return
+ * possible object is
+ * {@link SequenceType }
+ *
+ */
+ public SequenceType getSequence() {
+ return sequence;
}
- return this.name;
- }
-
- /**
- * Gets the value of the protein property.
- *
- * @return possible object is {@link ProteinType }
- *
- */
- public ProteinType getProtein()
- {
- return protein;
- }
-
- /**
- * Sets the value of the protein property.
- *
- * @param value
- * allowed object is {@link ProteinType }
- *
- */
- public void setProtein(ProteinType value)
- {
- this.protein = value;
- }
-
- /**
- * Gets the value of the gene property.
- *
- *
- * This accessor method returns a reference to the live list, not a snapshot.
- * Therefore any modification you make to the returned list will be present
- * inside the JAXB object. This is why there is not a set method
- * for the gene property.
- *
- *
- * For example, to add a new item, do as follows:
- *
- *
- * getGene().add(newItem);
- *
- *
- *
- *
- * Objects of the following type(s) are allowed in the list {@link GeneType }
- *
- *
- */
- public List getGene()
- {
- if (gene == null)
- {
- gene = new ArrayList();
+
+ /**
+ * Sets the value of the sequence property.
+ *
+ * @param value
+ * allowed object is
+ * {@link SequenceType }
+ *
+ */
+ public void setSequence(SequenceType value) {
+ this.sequence = value;
}
- return this.gene;
- }
-
- /**
- * Gets the value of the organism property.
- *
- * @return possible object is {@link OrganismType }
- *
- */
- public OrganismType getOrganism()
- {
- return organism;
- }
-
- /**
- * Sets the value of the organism property.
- *
- * @param value
- * allowed object is {@link OrganismType }
- *
- */
- public void setOrganism(OrganismType value)
- {
- this.organism = value;
- }
-
- /**
- * Gets the value of the organismHost property.
- *
- *
- * This accessor method returns a reference to the live list, not a snapshot.
- * Therefore any modification you make to the returned list will be present
- * inside the JAXB object. This is why there is not a set method
- * for the organismHost property.
- *
- *
- * For example, to add a new item, do as follows:
- *
- *
- * getOrganismHost().add(newItem);
- *
- *
- *
- *
- * Objects of the following type(s) are allowed in the list
- * {@link OrganismType }
- *
- *
- */
- public List getOrganismHost()
- {
- if (organismHost == null)
- {
- organismHost = new ArrayList();
+
+ /**
+ * Gets the value of the dataset property.
+ *
+ * @return
+ * possible object is
+ * {@link String }
+ *
+ */
+ public String getDataset() {
+ return dataset;
}
- return this.organismHost;
- }
-
- /**
- * Gets the value of the geneLocation property.
- *
- *
- * This accessor method returns a reference to the live list, not a snapshot.
- * Therefore any modification you make to the returned list will be present
- * inside the JAXB object. This is why there is not a set method
- * for the geneLocation property.
- *
- *
- * For example, to add a new item, do as follows:
- *
- *
- * getGeneLocation().add(newItem);
- *
- *
- *
- *
- * Objects of the following type(s) are allowed in the list
- * {@link GeneLocationType }
- *
- *
- */
- public List getGeneLocation()
- {
- if (geneLocation == null)
- {
- geneLocation = new ArrayList();
+
+ /**
+ * Sets the value of the dataset property.
+ *
+ * @param value
+ * allowed object is
+ * {@link String }
+ *
+ */
+ public void setDataset(String value) {
+ this.dataset = value;
}
- return this.geneLocation;
- }
-
- /**
- * Gets the value of the reference property.
- *
- *
- * This accessor method returns a reference to the live list, not a snapshot.
- * Therefore any modification you make to the returned list will be present
- * inside the JAXB object. This is why there is not a set method
- * for the reference property.
- *
- *
- * For example, to add a new item, do as follows:
- *
- *
- * getReference().add(newItem);
- *
- *
- *
- *
- * Objects of the following type(s) are allowed in the list
- * {@link ReferenceType }
- *
- *
- */
- public List getReference()
- {
- if (reference == null)
- {
- reference = new ArrayList();
+
+ /**
+ * Gets the value of the created property.
+ *
+ * @return
+ * possible object is
+ * {@link XMLGregorianCalendar }
+ *
+ */
+ public XMLGregorianCalendar getCreated() {
+ return created;
}
- return this.reference;
- }
-
- /**
- * Gets the value of the comment property.
- *
- *
- * This accessor method returns a reference to the live list, not a snapshot.
- * Therefore any modification you make to the returned list will be present
- * inside the JAXB object. This is why there is not a set method
- * for the comment property.
- *
- *
- * For example, to add a new item, do as follows:
- *
- *
- * getComment().add(newItem);
- *
- *
- *
- *
- * Objects of the following type(s) are allowed in the list {@link CommentType
- * }
- *
- *
- */
- public List getComment()
- {
- if (comment == null)
- {
- comment = new ArrayList();
+
+ /**
+ * Sets the value of the created property.
+ *
+ * @param value
+ * allowed object is
+ * {@link XMLGregorianCalendar }
+ *
+ */
+ public void setCreated(XMLGregorianCalendar value) {
+ this.created = value;
}
- return this.comment;
- }
-
- /**
- * Gets the value of the dbReference property.
- *
- *
- * This accessor method returns a reference to the live list, not a snapshot.
- * Therefore any modification you make to the returned list will be present
- * inside the JAXB object. This is why there is not a set method
- * for the dbReference property.
- *
- *
- * For example, to add a new item, do as follows:
- *
- *
- * getDbReference().add(newItem);
- *
- *
- *
- *
- * Objects of the following type(s) are allowed in the list
- * {@link DbReferenceType }
- *
- *
- */
- public List getDbReference()
- {
- if (dbReference == null)
- {
- dbReference = new ArrayList();
+
+ /**
+ * Gets the value of the modified property.
+ *
+ * @return
+ * possible object is
+ * {@link XMLGregorianCalendar }
+ *
+ */
+ public XMLGregorianCalendar getModified() {
+ return modified;
}
- return this.dbReference;
- }
-
- /**
- * Gets the value of the proteinExistence property.
- *
- * @return possible object is {@link ProteinExistenceType }
- *
- */
- public ProteinExistenceType getProteinExistence()
- {
- return proteinExistence;
- }
-
- /**
- * Sets the value of the proteinExistence property.
- *
- * @param value
- * allowed object is {@link ProteinExistenceType }
- *
- */
- public void setProteinExistence(ProteinExistenceType value)
- {
- this.proteinExistence = value;
- }
-
- /**
- * Gets the value of the keyword property.
- *
- *
- * This accessor method returns a reference to the live list, not a snapshot.
- * Therefore any modification you make to the returned list will be present
- * inside the JAXB object. This is why there is not a set method
- * for the keyword property.
- *
- *
- * For example, to add a new item, do as follows:
- *
- *
- * getKeyword().add(newItem);
- *
- *
- *
- *
- * Objects of the following type(s) are allowed in the list {@link KeywordType
- * }
- *
- *
- */
- public List getKeyword()
- {
- if (keyword == null)
- {
- keyword = new ArrayList();
+
+ /**
+ * Sets the value of the modified property.
+ *
+ * @param value
+ * allowed object is
+ * {@link XMLGregorianCalendar }
+ *
+ */
+ public void setModified(XMLGregorianCalendar value) {
+ this.modified = value;
}
- return this.keyword;
- }
-
- /**
- * Gets the value of the feature property.
- *
- *
- * This accessor method returns a reference to the live list, not a snapshot.
- * Therefore any modification you make to the returned list will be present
- * inside the JAXB object. This is why there is not a set method
- * for the feature property.
- *
- *
- * For example, to add a new item, do as follows:
- *
- *
- * getFeature().add(newItem);
- *
- *
- *
- *
- * Objects of the following type(s) are allowed in the list {@link FeatureType
- * }
- *
- *
- */
- public List getFeature()
- {
- if (feature == null)
- {
- feature = new ArrayList();
+
+ /**
+ * Gets the value of the version property.
+ *
+ */
+ public int getVersion() {
+ return version;
}
- return this.feature;
- }
-
- /**
- * Gets the value of the evidence property.
- *
- *
- * This accessor method returns a reference to the live list, not a snapshot.
- * Therefore any modification you make to the returned list will be present
- * inside the JAXB object. This is why there is not a set method
- * for the evidence property.
- *
- *
- * For example, to add a new item, do as follows:
- *
- *
- * getEvidence().add(newItem);
- *
- *
- *
- *
- * Objects of the following type(s) are allowed in the list
- * {@link EvidenceType }
- *
- *
- */
- public List getEvidence()
- {
- if (evidence == null)
- {
- evidence = new ArrayList();
+
+ /**
+ * Sets the value of the version property.
+ *
+ */
+ public void setVersion(int value) {
+ this.version = value;
}
- return this.evidence;
- }
-
- /**
- * Gets the value of the sequence property.
- *
- * @return possible object is {@link SequenceType }
- *
- */
- public SequenceType getSequence()
- {
- return sequence;
- }
-
- /**
- * Sets the value of the sequence property.
- *
- * @param value
- * allowed object is {@link SequenceType }
- *
- */
- public void setSequence(SequenceType value)
- {
- this.sequence = value;
- }
-
- /**
- * Gets the value of the dataset property.
- *
- * @return possible object is {@link String }
- *
- */
- public String getDataset()
- {
- return dataset;
- }
-
- /**
- * Sets the value of the dataset property.
- *
- * @param value
- * allowed object is {@link String }
- *
- */
- public void setDataset(String value)
- {
- this.dataset = value;
- }
-
- /**
- * Gets the value of the created property.
- *
- * @return possible object is {@link XMLGregorianCalendar }
- *
- */
- public XMLGregorianCalendar getCreated()
- {
- return created;
- }
-
- /**
- * Sets the value of the created property.
- *
- * @param value
- * allowed object is {@link XMLGregorianCalendar }
- *
- */
- public void setCreated(XMLGregorianCalendar value)
- {
- this.created = value;
- }
-
- /**
- * Gets the value of the modified property.
- *
- * @return possible object is {@link XMLGregorianCalendar }
- *
- */
- public XMLGregorianCalendar getModified()
- {
- return modified;
- }
-
- /**
- * Sets the value of the modified property.
- *
- * @param value
- * allowed object is {@link XMLGregorianCalendar }
- *
- */
- public void setModified(XMLGregorianCalendar value)
- {
- this.modified = value;
- }
-
- /**
- * Gets the value of the version property.
- *
- */
- public int getVersion()
- {
- return version;
- }
-
- /**
- * Sets the value of the version property.
- *
- */
- public void setVersion(int value)
- {
- this.version = value;
- }
}