X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fxml%2Fbinding%2Funiprot%2FOrganismType.java;h=ca8ad97c3add5d951c03102fdcdad1864c51d838;hb=0de37d1a047209510bab82225109ae2a47931f79;hp=e53de4ca961af734764e632bfc11808b48aee68f;hpb=57738a1f3c19b1c3a00bd3ac5108f8cd0af32f99;p=jalview.git diff --git a/src/jalview/xml/binding/uniprot/OrganismType.java b/src/jalview/xml/binding/uniprot/OrganismType.java index e53de4c..ca8ad97 100644 --- a/src/jalview/xml/binding/uniprot/OrganismType.java +++ b/src/jalview/xml/binding/uniprot/OrganismType.java @@ -2,9 +2,10 @@ // This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 // See http://java.sun.com/xml/jaxb // Any modifications to this file will be lost upon recompilation of the source schema. -// Generated on: 2019.04.05 at 08:01:44 AM BST +// Generated on: 2023.01.31 at 04:07:10 PM GMT // + package jalview.xml.binding.uniprot; import java.util.ArrayList; @@ -15,15 +16,13 @@ import javax.xml.bind.annotation.XmlAttribute; import javax.xml.bind.annotation.XmlElement; import javax.xml.bind.annotation.XmlType; + /** * Describes the source organism. * - *

- * Java class for organismType complex type. + *

Java class for organismType complex type. * - *

- * The following schema fragment specifies the expected content contained within - * this class. + *

The following schema fragment specifies the expected content contained within this class. * *

  * <complexType name="organismType">
@@ -53,203 +52,190 @@ import javax.xml.bind.annotation.XmlType;
  * 
  */
 @XmlAccessorType(XmlAccessType.FIELD)
-@XmlType(
-  name = "organismType",
-  propOrder =
-  { "name", "dbReference", "lineage" })
-public class OrganismType
-{
-
-  @XmlElement(required = true)
-  protected List name;
-
-  @XmlElement(required = true)
-  protected List dbReference;
-
-  protected OrganismType.Lineage lineage;
-
-  @XmlAttribute(name = "evidence")
-  protected List evidence;
-
-  /**
-   * Gets the value of the name property.
-   * 
-   * 

- * This accessor method returns a reference to the live list, not a snapshot. - * Therefore any modification you make to the returned list will be present - * inside the JAXB object. This is why there is not a set method - * for the name property. - * - *

- * For example, to add a new item, do as follows: - * - *

-   * getName().add(newItem);
-   * 
- * - * - *

- * Objects of the following type(s) are allowed in the list - * {@link OrganismNameType } - * - * - */ - public List getName() - { - if (name == null) - { - name = new ArrayList(); +@XmlType(name = "organismType", propOrder = { + "name", + "dbReference", + "lineage" +}) +public class OrganismType { + + @XmlElement(required = true) + protected List name; + @XmlElement(required = true) + protected List dbReference; + protected OrganismType.Lineage lineage; + @XmlAttribute(name = "evidence") + protected List evidence; + + /** + * Gets the value of the name property. + * + *

+ * This accessor method returns a reference to the live list, + * not a snapshot. Therefore any modification you make to the + * returned list will be present inside the JAXB object. + * This is why there is not a set method for the name property. + * + *

+ * For example, to add a new item, do as follows: + *

+     *    getName().add(newItem);
+     * 
+ * + * + *

+ * Objects of the following type(s) are allowed in the list + * {@link OrganismNameType } + * + * + */ + public List getName() { + if (name == null) { + name = new ArrayList(); + } + return this.name; } - return this.name; - } - - /** - * Gets the value of the dbReference property. - * - *

- * This accessor method returns a reference to the live list, not a snapshot. - * Therefore any modification you make to the returned list will be present - * inside the JAXB object. This is why there is not a set method - * for the dbReference property. - * - *

- * For example, to add a new item, do as follows: - * - *

-   * getDbReference().add(newItem);
-   * 
- * - * - *

- * Objects of the following type(s) are allowed in the list - * {@link DbReferenceType } - * - * - */ - public List getDbReference() - { - if (dbReference == null) - { - dbReference = new ArrayList(); + + /** + * Gets the value of the dbReference property. + * + *

+ * This accessor method returns a reference to the live list, + * not a snapshot. Therefore any modification you make to the + * returned list will be present inside the JAXB object. + * This is why there is not a set method for the dbReference property. + * + *

+ * For example, to add a new item, do as follows: + *

+     *    getDbReference().add(newItem);
+     * 
+ * + * + *

+ * Objects of the following type(s) are allowed in the list + * {@link DbReferenceType } + * + * + */ + public List getDbReference() { + if (dbReference == null) { + dbReference = new ArrayList(); + } + return this.dbReference; } - return this.dbReference; - } - - /** - * Gets the value of the lineage property. - * - * @return possible object is {@link OrganismType.Lineage } - * - */ - public OrganismType.Lineage getLineage() - { - return lineage; - } - - /** - * Sets the value of the lineage property. - * - * @param value - * allowed object is {@link OrganismType.Lineage } - * - */ - public void setLineage(OrganismType.Lineage value) - { - this.lineage = value; - } - - /** - * Gets the value of the evidence property. - * - *

- * This accessor method returns a reference to the live list, not a snapshot. - * Therefore any modification you make to the returned list will be present - * inside the JAXB object. This is why there is not a set method - * for the evidence property. - * - *

- * For example, to add a new item, do as follows: - * - *

-   * getEvidence().add(newItem);
-   * 
- * - * - *

- * Objects of the following type(s) are allowed in the list {@link Integer } - * - * - */ - public List getEvidence() - { - if (evidence == null) - { - evidence = new ArrayList(); + + /** + * Gets the value of the lineage property. + * + * @return + * possible object is + * {@link OrganismType.Lineage } + * + */ + public OrganismType.Lineage getLineage() { + return lineage; } - return this.evidence; - } - - /** - *

- * Java class for anonymous complex type. - * - *

- * The following schema fragment specifies the expected content contained - * within this class. - * - *

-   * <complexType>
-   *   <complexContent>
-   *     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
-   *       <sequence>
-   *         <element name="taxon" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded"/>
-   *       </sequence>
-   *     </restriction>
-   *   </complexContent>
-   * </complexType>
-   * 
- * - * - */ - @XmlAccessorType(XmlAccessType.FIELD) - @XmlType(name = "", propOrder = { "taxon" }) - public static class Lineage - { - @XmlElement(required = true) - protected List taxon; + /** + * Sets the value of the lineage property. + * + * @param value + * allowed object is + * {@link OrganismType.Lineage } + * + */ + public void setLineage(OrganismType.Lineage value) { + this.lineage = value; + } /** - * Gets the value of the taxon property. + * Gets the value of the evidence property. * *

- * This accessor method returns a reference to the live list, not a - * snapshot. Therefore any modification you make to the returned list will - * be present inside the JAXB object. This is why there is not a - * set method for the taxon property. + * This accessor method returns a reference to the live list, + * not a snapshot. Therefore any modification you make to the + * returned list will be present inside the JAXB object. + * This is why there is not a set method for the evidence property. * *

* For example, to add a new item, do as follows: - * *

-     * getTaxon().add(newItem);
+     *    getEvidence().add(newItem);
      * 
* * *

- * Objects of the following type(s) are allowed in the list {@link String } + * Objects of the following type(s) are allowed in the list + * {@link Integer } * * */ - public List getTaxon() - { - if (taxon == null) - { - taxon = new ArrayList(); - } - return this.taxon; + public List getEvidence() { + if (evidence == null) { + evidence = new ArrayList(); + } + return this.evidence; } - } + + /** + *

Java class for anonymous complex type. + * + *

The following schema fragment specifies the expected content contained within this class. + * + *

+     * <complexType>
+     *   <complexContent>
+     *     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+     *       <sequence>
+     *         <element name="taxon" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded"/>
+     *       </sequence>
+     *     </restriction>
+     *   </complexContent>
+     * </complexType>
+     * 
+ * + * + */ + @XmlAccessorType(XmlAccessType.FIELD) + @XmlType(name = "", propOrder = { + "taxon" + }) + public static class Lineage { + + @XmlElement(required = true) + protected List taxon; + + /** + * Gets the value of the taxon property. + * + *

+ * This accessor method returns a reference to the live list, + * not a snapshot. Therefore any modification you make to the + * returned list will be present inside the JAXB object. + * This is why there is not a set method for the taxon property. + * + *

+ * For example, to add a new item, do as follows: + *

+         *    getTaxon().add(newItem);
+         * 
+ * + * + *

+ * Objects of the following type(s) are allowed in the list + * {@link String } + * + * + */ + public List getTaxon() { + if (taxon == null) { + taxon = new ArrayList(); + } + return this.taxon; + } + + } }