X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fmc_view%2FPDBChain.java;h=2970ccf05e136b2b3a04a9d5f2a19e62c7b8ae55;hb=3778008766299b5db71d77e8530a9c0fe9b6916d;hp=5b209d092bbcc29831409343767bbd91f2119dcd;hpb=4b7d3640209c4434d569c746672cf9eed4250ace;p=jalview.git

diff --git a/src/mc_view/PDBChain.java b/src/mc_view/PDBChain.java
index 5b209d0..2970ccf 100755
--- a/src/mc_view/PDBChain.java
+++ b/src/mc_view/PDBChain.java
@@ -39,6 +39,7 @@ import jalview.schemes.ResidueProperties;
 import jalview.structure.StructureImportSettings;
 import jalview.structure.StructureMapping;
 import jalview.util.Comparison;
+import jalview.ws.datamodel.MappableContactMatrixI;
 
 public class PDBChain
 {
@@ -700,9 +701,10 @@ public class PDBChain
               ana = new AlignmentAnnotation(ana);
               ana.liftOver(dsq, sqmpping);
               dsq.addAlignmentAnnotation(ana);
-              if (cm != null)
+              if (cm != null && cm instanceof MappableContactMatrixI)
               {
-                dsq.addContactListFor(ana, cm);
+                dsq.addContactListFor(ana, ((MappableContactMatrixI) cm)
+                        .liftOver(dsq, sqmpping));
               }
             }
             else